PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA29403
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 255aa    MW: 29048.8 Da    PI: 7.7815
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA29403genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.16.2e-152065348
                               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                                e + + q tfs+   +++ KA ELSvLC+a+ a+i+ s++++ly+
  Tp57577_TGAC_v2_mRNA29403 20 AEKSNKSQMTFSNSTLTLFNKATELSVLCNAKTALIVTSPSNELYT 65
                               57778899*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.2E-9969IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.5721070IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-71232IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-141280IPR002100Transcription factor, MADS-box
PfamPF003193.6E-122165IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-73247IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-74768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MASDGKLNTR KRKFGEIKKA EKSNKSQMTF SNSTLTLFNK ATELSVLCNA KTALIVTSPS  60
NELYTCGYPN CDAVIQQFLT GKDTIQDSEK KKQEKIVETL RLDYEAIGDK LEKLXXXXXX  120
XXXXXXXXXD DMDLQSLEEF KNSLEKFRLN LGSAYDAKKL LEGDHASFVE SVPFRYIVLF  180
TLFQCVYFLI CFGVTWIPIA GMLFPLPFFL LITLRQHILP KIFSPNHLRE LDAAEYEERP  240
GAPRLSFNLS YKAC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5l25_A7e-30159250525613Boron transporter 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA29403
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1613981e-109AC161398.8 Medicago truncatula strain A17 clone mte1-16j17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3K6L42e-70A0A2K3K6L4_TRIPR; Agamous-like mads-box protein agl62-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132271027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G66656.14e-13AGAMOUS-like 91