PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA29697
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GATA
Protein Properties Length: 97aa    MW: 11046.4 Da    PI: 10.4411
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA29697genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA35.61.3e-112754734
                       GATA  7 tkTplWRrgpdgnktLCnaCGlyyrkkg 34
                               +kT++WR gp+g+ tLCna G++y++ +
  Tp57577_TGAC_v2_mRNA29697 27 KKTSQWRTGPNGPNTLCNAYGVRYKSSR 54
                               78***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.6E-42065IPR000679Zinc finger, GATA-type
PfamPF003203.4E-92754IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-52775No hitNo description
Gene3DG3DSA:3.30.50.103.7E-72753IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MYDIVSLSNQ AQLGNIYVLH FITISSKKTS QWRTGPNGPN TLCNAYGVRY KSSRLGPEYR  60
SAVSPTFVVS EHSNSRQKVS ELRRQKNQLH DDFRVW*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA29697
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022870331.17e-27GATA transcription factor 4-like
SwissprotO497438e-27GATA4_ARATH; GATA transcription factor 4
TrEMBLA0A2G2XT773e-25A0A2G2XT77_CAPBA; GATA transcription factor
STRINGAES586342e-25(Medicago truncatula)
STRINGSolyc01g090760.2.11e-25(Solanum lycopersicum)
STRINGPGSC0003DMT4000669531e-25(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85372941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.13e-29GATA transcription factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]