PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA29711

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

M-type_MADS

Protein Properties

Length: 172aa MW: 19667.9 Da PI: 4.5351

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA29711	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	27.1	5.3e-09	32	59	19	46
HHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 19 gilKKAeELSvLCdaevaviifsstgkl 46 g++ K ELS+LC a+ a+i+ ss+++l Tp57577_TGAC_v2_mRNA29711 32 GLFNKVTELSILCKAKTALIVRSSNNEL 59 9*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	9.657	6	66	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.41E-9	31	77	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.7E-7	31	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MAFEGNNAAK KENPRKRRID EXXXXXXXXX XGLFNKVTEL SILCKAKTAL IVRSSNNELD 60 ACGYPDCDAV VQQFLTGKVI TEDYDKKKKE EVVEIQRLEY ETIVDKLMEL KEEEKNLEAI 120 NDEAEKSGYG IPDWWNGSID DMSLESLQEF KNSLETLKLN LRLNLDAKKL M*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA29711

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027189143.1	5e-46	agamous-like MADS-box protein AGL62
TrEMBL	A0A2K3L5B9	2e-95	A0A2K3L5B9_TRIPR; Agamous-like mads-box protein agl62-like (Fragment)
STRING	XP_004497957.1	2e-45	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13227	10	27

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA29711