PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA29739
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 51aa    MW: 5882.67 Da    PI: 9.1565
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA29739genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY352.8e-113151121
                               ---SS-EEEEEEE--TT-SS- CS
                       WRKY  1 ldDgynWrKYGqKevkgsefp 21
                               ldD y+WrKYGqK+vkg+++p
  Tp57577_TGAC_v2_mRNA29739 31 LDDCYRWRKYGQKVVKGNPNP 51
                               58*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.0E-141651IPR003657WRKY domain
SuperFamilySSF1182902.48E-92351IPR003657WRKY domain
PROSITE profilePS5081114.9752651IPR003657WRKY domain
PfamPF031062.5E-63251IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 51 aa     Download sequence    Send to blast
KLESYAEMNG ATRAIREPRV VVQTTSEVDI LDDCYRWRKY GQKVVKGNPN P
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA29739
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150403e-51AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013458833.11e-25probable WRKY transcription factor 2
RefseqXP_024633691.11e-25probable WRKY transcription factor 2
SwissprotQ9FG774e-23WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A072V4333e-24A0A072V433_MEDTR; Putative transcription factor WRKY family
TrEMBLA0A2U8UG523e-24A0A2U8UG52_TRIRP; Putative WRKY transcription factor 2 (Fragment)
TrEMBLA0A371EY413e-24A0A371EY41_MUCPR; Putative WRKY transcription factor 2 (Fragment)
STRINGGLYMA04G12830.26e-25(Glycine max)
STRINGGLYMA06G47880.36e-25(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2502423
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.12e-25WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]