PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA29748

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bZIP

Protein Properties

Length: 148aa MW: 17301.6 Da PI: 7.608

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA29748	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37	7.4e-12	62	107	5	50
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 ++ rr+q+NRe+ArrsR RKk +e+L + L+ eN++Lk++l Tp57577_TGAC_v2_mRNA29748 62 RKIRRMQSNRESARRSRWRKKRHVENLNNDLNRLKMENRELKNQLG 107 5789**************************************8775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-9	58	122	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.082	60	106	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.1E-9	62	109	No hit	No description
SuperFamily	SSF57959	9.14E-12	62	116	No hit	No description
Pfam	PF00170	8.2E-8	62	108	IPR004827	Basic-leucine zipper domain
CDD	cd14702	9.04E-14	63	111	No hit	No description
PROSITE pattern	PS00036	0	65	80	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MSSFYEEEFP VQLMSHSVHE TLMFTQDEIE ELFSLINQPV NSSSPESGSQ GSNRAVYSTC 60 ERKIRRMQSN RESARRSRWR KKRHVENLNN DLNRLKMENR ELKNQLGLTM QYNLILSAEN 120 ERLKSESMSL LATLLDLYRT LEIIISQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA29748

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004498959.1	4e-73	basic leucine zipper 4
TrEMBL	A0A2Z6M432	1e-85	A0A2Z6M432_TRISU; Uncharacterized protein
STRING	XP_004498959.1	1e-72	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5996	30	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22850.2	1e-15	basic leucine-zipper 6

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA29748