PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA29753

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bHLH

Protein Properties

Length: 181aa MW: 20153.5 Da PI: 9.9771

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA29753	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.7	6.6e-11	31	73	9	55
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er RR+++N+ f L + +P+ + + +K +i ++++eYIk+L+ Tp57577_TGAC_v2_mRNA29753 31 ERERRKKMNQMFTHLNTTVPTlL-----PNATKEAIITETIEYIKELE 73 9******************55.....789************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.915	22	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-5	28	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-12	29	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.2E-12	30	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-8	30	73	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.36E-5	31	69	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MEVYTNKNNT EMSNRKRGAT ATKSEETLNT ERERRKKMNQ MFTHLNTTVP TLLPNATKEA 60 IITETIEYIK ELEKKKKMLE DLKELIKIPV IQGSLLIPCR NRNCSVSVTV SNNVAFFGIE 120 SVAKPGLITL ILKVFFNNQS EILAANVSVN DGILILAITA LVQSGNSATI EKIKREIMSL 180 *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	14	36	RKRGATATKSEETLNTERERRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA29753

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003609586.1	2e-80	uncharacterized protein LOC11405343
TrEMBL	A0A2K3JTZ0	1e-125	A0A2K3JTZ0_TRIPR; Transcription factor bHLH125-like protein
STRING	AES91783	6e-80	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14330	13	14

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA29753