PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA29771
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 568aa    MW: 64511.1 Da    PI: 4.8029
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA29771genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.39.4e-10516565147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                                + rWT  E++ l  +vk++G g+Wk I +      + R++ ++k++w+++
  Tp57577_TGAC_v2_mRNA29771 516 KRRWTSLEEDTLRAGVKMFGEGNWKDIREFYSnifEFRSAGDLKDKWRNL 565
                                579*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.9E-13508567IPR009057Homeodomain-like
PROSITE profilePS5129415.915511567IPR017930Myb domain
SuperFamilySSF466892.69E-13513566IPR009057Homeodomain-like
SMARTSM007173.3E-5515567IPR001005SANT/Myb domain
PfamPF002492.4E-7516565IPR001005SANT/Myb domain
CDDcd116603.84E-16517567No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MDKVISNWTM EFLLQSFVPD SLIEKTLTVL PQSTADSRLK IALLLRTLQT SLLNASLSET  60
SLEILEHLES LYHNDAIPIL DSMRSAYCAV SVESTVKYLI ASPEGPSGEY YSAVRRIWHE  120
RVEKLSGEGR RSELLSDELD QWRQEVEAAL WHVRVSERLV GLNTRRDAMN EMKRFLKEAW  180
ETIGLSYIDS VETVSVGNGL RHEGVCENAS ASGSEVSKKC DGRLEGLEKE KMNSGCHDED  240
ENENENDNDN EENKNKNEND NDNEENENKN ENENENKNEN ENENDNDNEE NENENKNKNE  300
NENGDVATMH ENHGNEQLEE RVGTSCDANQ EVGECDSSKG DKEILKDNHK LKRKRSAIRT  360
YHAGVRISDA EEAPEEAKTT NLSCKCENLP SAEVKKVQES LRSSSMELKA MVKDPLPDAL  420
HTSEVVRSKL ATKDINRSPP IENQSGHVDA PDSTACKTIV LYQHNDVNPG KKSSVHCSSS  480
RRLRPKLMER GNSAHTFEWD DSIENKPNVI QPKKKKRRWT SLEEDTLRAG VKMFGEGNWK  540
DIREFYSNIF EFRSAGDLKD KWRNLIR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1511517PKKKKRR
2512517KKKKRR
3513517KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA29771
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027190658.10.0uncharacterized protein LOC101503526 isoform X2
TrEMBLA0A2Z6LQ200.0A0A2Z6LQ20_TRISU; Uncharacterized protein
STRINGXP_007146880.11e-141(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.16e-11TRF-like 5