PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA29773

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bZIP

Protein Properties

Length: 388aa MW: 42195.4 Da PI: 5.8935

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA29773	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.9	2.8e-10	188	235	5	52
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l + Tp57577_TGAC_v2_mRNA29773 188 KRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLY 235 9****************************************9888665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.7E-16	184	248	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.691	186	249	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.4E-8	188	241	No hit	No description
SuperFamily	SSF57959	1.62E-10	188	238	No hit	No description
Pfam	PF00170	9.1E-9	188	235	IPR004827	Basic-leucine zipper domain
CDD	cd14703	2.11E-24	189	238	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
METQMQDPPS NSNSNPNVTS SSTTPPSSNI FIRGTVNGVS TTASVAVESH SHHRRSHSEI 60 NYRLPDDMMD LSPSDPLNGG GSSTASFEEI GSEDDLFFTY IDVDKLGGVT NGLNQNGYGN 120 GNGNGVGTSG NNDGEKSPND DATTPRTRHR HSCSVDGSTS TSMFGEIMDA KKAMPPDKLA 180 ELWTIDPKRA KRILANRQSA ARSKERKARY IQELERKVQT LQTEATTLSA QLTLYQRDTG 240 GLSNENTELK IRLQAMEQQA HLRDALNDAL MKEVERLKIA TGEAMNPSES FNMGMHQMQF 300 GGSNFFSMPQ HSGPLGHPQD IQFPQFGHSP SNMPNHQMQQ TNSHQMSDML QNDQLGRLQG 360 LDISSKGSTL VKSEGPSISA SESSTTF*

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

METQMQDPPS NSNSNPNVTS SSTTPPSSNI FIRGTVNGVS TTASVAVESH SHHRRSHSEI  60
NYRLPDDMMD LSPSDPLNGG GSSTASFEEI GSEDDLFFTY IDVDKLGGVT NGLNQNGYGN  120
GNGNGVGTSG NNDGEKSPND DATTPRTRHR HSCSVDGSTS TSMFGEIMDA KKAMPPDKLA  180
ELWTIDPKRA KRILANRQSA ARSKERKARY IQELERKVQT LQTEATTLSA QLTLYQRDTG  240
GLSNENTELK IRLQAMEQQA HLRDALNDAL MKEVERLKIA TGEAMNPSES FNMGMHQMQF  300
GGSNFFSMPQ HSGPLGHPQD IQFPQFGHSP SNMPNHQMQQ TNSHQMSDML QNDQLGRLQG  360
LDISSKGSTL VKSEGPSISA SESSTTF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA29773

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004500364.1	0.0	transcription factor RF2b-like
Swissprot	Q6S4P4	1e-100	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A2K3PF31	0.0	A0A2K3PF31_TRIPR; Transcription factor RF2b-like protein (Fragment)
STRING	XP_004500364.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06850.1	6e-87	basic leucine-zipper 52

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA29773

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]