PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA30015
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LSD
Protein Properties Length: 149aa    MW: 15420 Da    PI: 7.9166
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA30015genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD146.17.9e-153054125
                    zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                               C+gCr+lL+YP GA+sV+Ca+C++V
  Tp57577_TGAC_v2_mRNA30015 30 CSGCRNLLMYPVGATSVCCAVCNAV 54
                               ************************9 PP
2zf-LSD146.75e-156993125
                    zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                               CggC+tlL+Y rGA+sV+C++C+tV
  Tp57577_TGAC_v2_mRNA30015 69 CGGCHTLLMYIRGATSVQCSCCHTV 93
                               ************************9 PP
3zf-LSD141.81.7e-13107131125
                    zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                                Cg+Cr lL+Y +GA+sV+Ca+C++V
  Tp57577_TGAC_v2_mRNA30015 107 CGNCRMLLMYQYGARSVKCAVCNFV 131
                                ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.105.4E-426128No hitNo description
TIGRFAMsTIGR010536.2E-142757IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-113054IPR005735Zinc finger, LSD1-type
SuperFamilySSF486958.65E-530128IPR011031Multihaem cytochrome
TIGRFAMsTIGR010539.0E-156695IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-126993IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.1E-12104134IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-12107131IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MPVPLAPYPT PPPAPYTPPP TNGGQSQLVC SGCRNLLMYP VGATSVCCAV CNAVTAVPPP  60
GTEMAQLVCG GCHTLLMYIR GATSVQCSCC HTVNLALEAN QVAHVNCGNC RMLLMYQYGA  120
RSVKCAVCNF VTSVGASAST TEQQKFST*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA30015
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0532360.0BT053236.1 Medicago truncatula clone MTYFP_FQ_FR_FS1G-O-19 unknown mRNA.
GenBankBT0534600.0BT053460.1 Medicago truncatula clone MTYFP_FQ_FR_FS1G-A-4 unknown mRNA.
GenBankBT1381570.0BT138157.1 Medicago truncatula clone JCVI-FLMt-11K3 unknown mRNA.
GenBankBT1383240.0BT138324.1 Medicago truncatula clone JCVI-FLMt-16N6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012075917.11e-92protein LOL1
RefseqXP_012075918.11e-92protein LOL1
RefseqXP_012075919.11e-92protein LOL1
SwissprotQ93ZB11e-80LOL1_ARATH; Protein LOL1
TrEMBLA0A2K3N6E21e-101A0A2K3N6E2_TRIPR; Protein LOL1-like
STRINGcassava4.1_018557m1e-87(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81873346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.33e-67lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]