PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA30128

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

GRF

Protein Properties

Length: 340aa MW: 38289.7 Da PI: 9.6137

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA30128	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	66.6	3.4e-21	79	123	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRC +++ +++k+C+rH+ r r rsrk++e+ Tp57577_TGAC_v2_mRNA30128 79 DPEPGRCRRTDGKKWRCAKDAHPDSKYCDRHMIRRRYRSRKPVES 123 79****************************************997 PP
2	QLQ	54.6	3.3e-19	18	53	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT +Q+q+L++Q+l++KyL a++ vPp+Ll++i+k Tp57577_TGAC_v2_mRNA30128 18 PFTVSQWQELEHQALIFKYLKAGVSVPPDLLLPIRK 53 9*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.8E-10	17	53	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.931	18	53	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	3.0E-14	18	52	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	22.663	79	123	IPR014977	WRC domain
Pfam	PF08879	3.6E-18	80	122	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MSVQPPPQLM WPPSNHPPFT VSQWQELEHQ ALIFKYLKAG VSVPPDLLLP IRKSLQLMSH 60 PSRKNKTTQQ LGYYGKKIDP EPGRCRRTDG KKWRCAKDAH PDSKYCDRHM IRRRYRSRKP 120 VESSSCSSQS SSVTVSSTSQ QIGSSIGTAS ATVTASAAVT AASTFHTLPL HTNGTREGLA 180 FTLGNTIPHM DPMLLSHQGS KKSYRFGLNT EAEEHDLVQK DFGTVKYQGY DFTSDDTWYN 240 NMSQIPSNNV SESRTGSTMV NKGNYFQQQR AREPEQLFNL DTARSKEIVF NSQLGNFKQE 300 YQSSQSLFSD WQWKKDLASS GMEYKPSKDF NTNPDINAD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA30128

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003612622.1	1e-178	growth-regulating factor 5
TrEMBL	A0A2K3N0L4	0.0	A0A2K3N0L4_TRIPR; Growth-regulating factor 3-like protein
STRING	AES95580	1e-177	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14948	11	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	1e-37	growth-regulating factor 2

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA30128