PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA3016

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Trihelix

Protein Properties

Length: 201aa MW: 21975.1 Da PI: 8.0829

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA3016	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	34.2	6.4e-11	43	92	1	44
trihelix 1 rWtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergfe 44 rWt+qe+l+Li+++++ e+r++ g+ + +p+W+ vs++++++g+ Tp57577_TGAC_v2_mRNA3016 43 RWTRQEILVLIQGKSDAESRFKPGRngsgfgSSEPKWALVSSYCKKHGVF 92 8*******************986666777**************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04640	2.0E-26	99	172	IPR006734	Protein of unknown function DUF597

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MALDQPSLPS NPNSIDGESG NGTPPSSAVN GGEDGKPTAR LPRWTRQEIL VLIQGKSDAE 60 SRFKPGRNGS GFGSSEPKWA LVSSYCKKHG VFDGIVQVRR YVYHDVVRLG DLEKLIDCSN 120 IQAYTVNGAK VVFLNERVQS RSCKGSSNAN SCCSCDRILQ EPFHFCSLSC KVFFVSFIFV 180 SLLYCTVLFP ILTGLDCLYF *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA3016

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003621623.1	1e-50	trihelix transcription factor ASR3
Swissprot	Q8VZ20	4e-24	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	A0A2K3NBP3	2e-59	A0A2K3NBP3_TRIPR; Uncharacterized protein
STRING	AES77841	5e-50	(Medicago truncatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	2e-26	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA3016

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]