PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA30230
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HB-other
Protein Properties Length: 158aa    MW: 18302.5 Da    PI: 7.0601
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA30230genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.82.8e-2191146156
                                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                +++ +++t+ q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k
  Tp57577_TGAC_v2_mRNA30230  91 KKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSHDLGLKPRQVKFWFQNRRTQMK 146
                                688999***********************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.85E-2080149IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.2E-2285153IPR009057Homeodomain-like
PROSITE profilePS5007116.81188148IPR001356Homeobox domain
SMARTSM003891.6E-1889152IPR001356Homeobox domain
PfamPF000467.4E-1991146IPR001356Homeobox domain
CDDcd000866.85E-1791149No hitNo description
PROSITE patternPS000270123146IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MFGDCQVMST MGGGNVVVNS ESLFSSPIHN PNFNFMSTMP FQPFSSSMKE EDGMLRGKEE  60
IMDQSGSGSE QVEDKSGNEQ EITNEQETTK KKRYHRHTAR QIQEMEALFK ECPHPDDKQR  120
LKLSHDLGLK PRQVKFWFQN RRTQMKAQQD RSDNVILR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA30230
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT4857965e-65CT485796.1 Medicago truncatula chromosome 5 clone mth2-154i23, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003612811.11e-102homeobox-leucine zipper protein ROC3
RefseqXP_024639712.11e-102homeobox-leucine zipper protein ROC3
SwissprotA2ZAI72e-46ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLA0A2K3P3U01e-108A0A2K3P3U0_TRIPR; Homeobox-leucine zipper protein ROC3-like
STRINGAES957691e-101(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1882656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.13e-38homeobox-7