PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA30656
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 241aa    MW: 27707.1 Da    PI: 7.0853
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA30656genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.71.6e-12160185126
                                --S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                y   +C+++ +tG+C yGd+CkF+H+
  Tp57577_TGAC_v2_mRNA30656 160 YQPDICKDYKETGYCGYGDSCKFMHD 185
                                67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.44E-9158190IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7159186IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878159187IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-10160185IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-13160190IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MEDSEPKSAE NNQQTEQVCS FFRKAVNKKN IRKRSIDSYE DDSNNEESLM HVQKKNTKTC  60
NKLFFSSAST EQKKEESEKH GFHFESSKEI QVQHDSKATA TLETETDFSN DAHARRERAL  120
KQAXXXXXXX XXXISAEKAG GSHGPLRASA HIRVSSKFDY QPDICKDYKE TGYCGYGDSC  180
KFMHDRGDYK SGWQMDKEWE QARKSKAVKE TFDATTDDHC AHRHWGMLLF SFLSYFACYV  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M2e-26144218181255RING finger protein 113A
5z58_M2e-26144218181255RING finger protein 113A
6ff4_t2e-26144218181255RING finger protein 113A
6ff7_t2e-26144218181255RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA30656
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1453297e-62AC145329.35 Medicago truncatula clone mth2-8i21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016183074.13e-96zinc finger CCCH domain-containing protein 1
RefseqXP_020971264.13e-96zinc finger CCCH domain-containing protein 1
RefseqXP_025632420.13e-96zinc finger CCCH domain-containing protein 1
SwissprotQ9FNG62e-78C3H51_ARATH; Zinc finger CCCH domain-containing protein 51
TrEMBLA0A2K3LH091e-135A0A2K3LH09_TRIPR; Zinc finger CCCH domain-containing protein 1-like
STRINGXP_004494406.12e-95(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06420.27e-81C3H family protein