PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA30659
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bZIP
Protein Properties Length: 298aa    MW: 33245.6 Da    PI: 8.1166
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA30659genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1322.7e-101662051150
                                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1  11 qkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                                  NR +A+rsR RK+++i eLe+ v +L++e +aL  ++ 
  Tp57577_TGAC_v2_mRNA30659 166 LANRQSAQRSRVRKLQYISELERSVTSLQTEVSALSPRVA 205
                                56*****************************999987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.6E-7154220IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.27E-10163212No hitNo description
Gene3DG3DSA:1.20.5.1703.4E-12164211No hitNo description
PROSITE patternPS000360164178IPR004827Basic-leucine zipper domain
CDDcd147032.73E-19164211No hitNo description
PfamPF001704.3E-8164204IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.519164210IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
NTNHTSKLAI FFSSPXXXXX XXXXTSTTTA TTTTTTLNNT SDQNLPSWMD EFLDFSSVRR  60
GAHRRSASDS IAFLETSFLE EDCRSGGGGG GDFDRLDDDQ FISMFSDNVA GVSFPPPPLS  120
STSNPSSXXX XXXXXXXXXX XXXXXXXXXX XTNAKSNCLM VCNRILANRQ SAQRSRVRKL  180
QYISELERSV TSLQTEVSAL SPRVAFLDHQ RLILNVDNSA LKQRIAALAQ DKLFKDAHQE  240
ALKKEIERLR QIYHQQNIQK MGNSANNNNN NGHSLQSPPT SQSQPQQHSF QKEQLLS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA30659
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150402e-35AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028192886.14e-92basic leucine zipper 34-like
SwissprotQ5JMK68e-70BZP06_ORYSJ; Basic leucine zipper 6
TrEMBLK7LWF53e-92K7LWF5_SOYBN; Uncharacterized protein
STRINGGLYMA12G35650.25e-93(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20113488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.12e-58bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]