PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA3076

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

LBD

Protein Properties

Length: 203aa MW: 22198.2 Da PI: 5.1902

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA3076	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131	5e-41	33	133	1	100
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +CaaCk+lrr+C+++ Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe +r da++s+vyeA ar+rdPvyG++g i +lq Tp57577_TGAC_v2_mRNA3076 33 PCAACKILRRRCSAEkCVLAPYFPPNDPAKFTIAHRVFGASNIIKFLQELPEAQRADAVTSMVYEASARVRDPVYGCAGAICQLQ 117 7*********9766***************************************************************** PP DUF260 85 qqleqlkaelallkee 100 +q+++l+a+la+ ++e Tp57577_TGAC_v2_mRNA3076 118 KQVNELQAQLAKSQAE 133 *********99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.697	32	134	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.0E-41	33	131	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MESIISDSSS PTSSSNSLQL IAQVPSQVVV MSPCAACKIL RRRCSAEKCV LAPYFPPNDP 60 AKFTIAHRVF GASNIIKFLQ ELPEAQRADA VTSMVYEASA RVRDPVYGCA GAICQLQKQV 120 NELQAQLAKS QAEVVNMQLQ QANLVALICM EMSQSPQESP QQISLDNNNF IQSPNHNSGH 180 QIGLNFFDEN TSLNSLWEPL WT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-39	25	136	3	113	LOB family transfactor Ramosa2.1
5ly0_B	1e-39	25	136	3	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA3076

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC149268	5e-93	AC149268.21 Medicago truncatula clone mth2-94j16, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003606493.1	1e-110	LOB domain-containing protein 11
Swissprot	Q9LQR0	4e-74	LBD1_ARATH; LOB domain-containing protein 1
Swissprot	Q9SK08	8e-74	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	G7JRG8	1e-109	G7JRG8_MEDTR; Lateral organ boundaries (LOB) domain protein
STRING	AES88690	1e-109	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1303	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	6e-73	LOB domain-containing protein 1

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA3076