PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA30811

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

TCP

Protein Properties

Length: 225aa MW: 24637.4 Da PI: 9.3397

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA30811	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.3	5.6e-38	20	183	2	128
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasns 85 ++kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++ ++++ Tp57577_TGAC_v2_mRNA30811 20 TVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSLSEHKPFL--- 100 79**************************************************************88888666211111111... PP TCP 86 ssg.........................................................kaaksaakskksqksaasalnlak 112 + + +++++l + Tp57577_TGAC_v2_mRNA30811 101 --PpspfilgkrlrsehdepvsiaaptappgiwrpdfaqlwsfaaaqpppevlsisphqqQ---------------HQHNSLFH 167 ..13334444555555566677778888888888999999998876555554444443221...............22222222 PP TCP 113 esrakarararertre 128 +++++++++++ + ++ Tp57577_TGAC_v2_mRNA30811 168 HQQQQQQQNQHHQHQQ 183 2222222222222211 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	9.3E-34	26	184	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.209	26	80	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MSNCKETTTT NAVEPTTNQT VKKPPSKDRH SKVDGRGRRI RMPIICAARV FQLTRELGHK 60 SDGQTIEWLL RQAEPSIIAA TGTGTTPASF SSLSEHKPFL PPSPFILGKR LRSEHDEPVS 120 IAAPTAPPGI WRPDFAQLWS FAAAQPPPEV LSISPHQQQH QHNSLFHHQQ QQQQQNQHHQ 180 HQQQGSMGEA SAARLGNYLP GHLNLLASLS GGNGNSGRGD DEDR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA30811

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC160925	1e-118	AC160925.39 Medicago truncatula clone mth2-176a22, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004498111.1	1e-117	transcription factor TCP7-like
Swissprot	Q9FMX2	3e-72	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A2K3MSF8	1e-164	A0A2K3MSF8_TRIPR; Transcription factor TCP7-like protein
STRING	XP_004498111.1	1e-116	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5469	31	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	8e-50	TCP family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA30811