PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA30827
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 125aa    MW: 14937 Da    PI: 10.7435
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA30827genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.34.6e-102669447
                               S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                               WT +E+ +++++     +g+Wk I+++   ++t+ q+ s+ qky
  Tp57577_TGAC_v2_mRNA30827 26 WTDDEHIRFLEGLLHGYKGNWKVISQKYVVTKTPTQVASHAQKY 69
                               ***********987766678*********9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.3621874IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-51973IPR009057Homeodomain-like
SuperFamilySSF466892.02E-132175IPR009057Homeodomain-like
SMARTSM007172.4E-42272IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.9E-142373IPR006447Myb domain, plants
PfamPF002491.1E-72569IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MPPLNFQFTD QATHNNNAQM RKVVHWTDDE HIRFLEGLLH GYKGNWKVIS QKYVVTKTPT  60
QVASHAQKYF KRQKQRFDDK SKDIKRKPRT SIHDXXXXXX XXXXXXXXXX XXXXTLMRDY  120
QQRM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17087KRQKQRFDDKSKDIKRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA30827
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003600854.24e-28transcription factor SRM1
TrEMBLG7JAP19e-27G7JAP1_MEDTR; MYB-like DNA-binding domain, shaqkyf class protein
STRINGAES711053e-27(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3898622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01200.19e-20MYB family protein