PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA31073
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 337aa    MW: 39177.5 Da    PI: 7.1613
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA31073genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.33.5e-5461351129
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksg 81 
                                +ppGfrFhPtd elv +yL+kkv+++k++l +vikevd+y++ePwdL+   ++ +ee+ e yfFs++dkky+tg+r+nrat +g
  Tp57577_TGAC_v2_mRNA31073   6 VPPGFRFHPTDGELVGYYLRKKVASHKIDL-DVIKEVDLYRIEPWDLQGrcRIGNEEQhEFYFFSHKDKKYPTGTRTNRATMAG 88 
                                69****************************.9***************95344444444488*********************** PP

                        NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                +Wkatg+dk+v++ +++l+g++ktLvfykgrap+g+ktdW+mheyrle
  Tp57577_TGAC_v2_mRNA31073  89 FWKATGRDKSVYE-RTKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLE 135
                                *************.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-553167IPR003441NAC domain
PROSITE profilePS5100555.1566167IPR003441NAC domain
PfamPF023654.1E-277134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MMESCVPPGF RFHPTDGELV GYYLRKKVAS HKIDLDVIKE VDLYRIEPWD LQGRCRIGNE  60
EQHEFYFFSH KDKKYPTGTR TNRATMAGFW KATGRDKSVY ERTKLIGMRK TLVFYKGRAP  120
NGQKTDWIMH EYRLETIENA PPQASIYILN LFLYIEEGWV VCKAFKKKTN VQTKTNERWD  180
QQTSGIISKV DPIHDLTLCQ PHRIPPQNFM YKQEIEADNA ILSFMHSEHL LPLPHLECPS  240
MPKRQNTMSI ISENNINNND FQNGLLSNIN KTEKVTDWRA FDKFVASQLS QEDHRHDTSS  300
DMSLLLLQSS RDEENKLSSF LSTSLDCDFG ICVFEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-49316812169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA31073
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1495461e-109AC149546.14 Medicago truncatula chromosome 8 clone mth2-70o13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003629345.20.0NAC domain-containing protein 37
SwissprotQ9SL411e-126NAC37_ARATH; NAC domain-containing protein 37
TrEMBLG7LCZ00.0G7LCZ0_MEDTR; Putative transcription factor NAM family
STRINGAET038210.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45653459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-117vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]