PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA31093
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 198aa    MW: 22212.1 Da    PI: 3.9956
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA31093genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding301.3e-093252246
                               T-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqk 46
                               + W+tIa++++ gRt++++k++w++
  Tp57577_TGAC_v2_mRNA31093  3 K-WSTIAAELP-GRTDNEVKNHWHT 25
                               4.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.692131IPR017930Myb domain
SuperFamilySSF466892.26E-8239IPR009057Homeodomain-like
PfamPF002499.4E-7325IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-12341IPR009057Homeodomain-like
CDDcd001672.75E-6327No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MSKWSTIAAE LPGRTDNEVK NHWHTSLKKR VQHNTITNSE EIKATKSRDI TISQVTTPAS  60
SQDTNGPLSP FSSSSEFSST HDLDDMSFID AFIESMDQSF LLDDLNGIVQ NNTNCDFQNQ  120
DTSLVSPNHS SNDDSNLVVD NDFGSFVDAY YESTVDNFWT PYEAEMSHVP TPSHMLMTTL  180
PMESEYFSVV FEEDLWS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA31093
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013443539.12e-57transcription factor MYB13
TrEMBLA0A2K3LA911e-126A0A2K3LA91_TRIPR; MYB-related protein MYB 4-like (Fragment)
STRINGXP_004513558.11e-47(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.15e-12myb domain protein 13