PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA31097
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 236aa    MW: 27208.2 Da    PI: 4.984
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA31097genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.2e-151461148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g WT+eEd +l+ +v ++G  +W+  ++  g+ R++k+c++rw +yl
  Tp57577_TGAC_v2_mRNA31097 14 KGTWTAEEDRKLIAYVSRYGCWNWRQLPKFAGLSRCGKSCRLRWMNYL 61
                               799*****************99************************97 PP
2Myb_DNA-binding61.91.3e-1967110146
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                rg++T++E+el+++ +k+lG++ W+tIa++++ gRt++++k++w++
  Tp57577_TGAC_v2_mRNA31097  67 RGNFTQQEEELIIKMHKKLGNR-WSTIAAELP-GRTDNEVKNHWHT 110
                                89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.941961IPR017930Myb domain
SuperFamilySSF466899.52E-3111108IPR009057Homeodomain-like
SMARTSM007171.4E-111363IPR001005SANT/Myb domain
PfamPF002493.6E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-241568IPR009057Homeodomain-like
CDDcd001672.21E-91661No hitNo description
PROSITE profilePS5129427.84362116IPR017930Myb domain
SMARTSM007175.8E-1866114IPR001005SANT/Myb domain
PfamPF002497.0E-1767110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2669116IPR009057Homeodomain-like
CDDcd001671.92E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MARTPSCDKS GMRKGTWTAE EDRKLIAYVS RYGCWNWRQL PKFAGLSRCG KSCRLRWMNY  60
LKPDIKRGNF TQQEEELIIK MHKKLGNRWS TIAAELPGRT DNEVKNHWHT SLKKRVQHNT  120
ITNIEDTNGP LSPISSSSEF SSTTTYSDQS STHDFDDFGF LDGLMESMDQ SFWLDDLSEI  180
VQDNTNDVLL VSPNESNLVL DNDFASFLDD SFWTQPYEAD MSQVLYNNHW GFSEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA31097
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1388501e-102BT138850.1 Medicago truncatula clone JCVI-FLMt-15C13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013443536.11e-104transcription factor WER
SwissprotQ9SJX89e-60MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A2Z6NQP81e-132A0A2Z6NQP8_TRISU; Uncharacterized protein
STRINGXP_004513558.15e-94(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.12e-59myb domain protein 13
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]