PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA31188

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

LBD

Protein Properties

Length: 173aa MW: 19458.5 Da PI: 8.1271

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA31188	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.5	2.3e-43	38	137	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +Ca+Ck+lrr+CakdC+++pyfp+++p+kfa+vhk+FGasnv+k+l++lp ++r+da+sslvyeA+ar++dPvyG+vg i+ lq Tp57577_TGAC_v2_mRNA31188 38 PCASCKLLRRRCAKDCIFSPYFPSNDPQKFAIVHKVFGASNVSKMLQELPIQQRSDAVSSLVYEAHARVKDPVYGCVGAISYLQ 121 7********************************************************************************* PP DUF260 85 qqleqlkaelallkee 100 +q++ l+ +la++++e Tp57577_TGAC_v2_mRNA31188 122 NQVSDLQMQLAVAQAE 137 *********99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.559	37	138	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.7E-43	38	135	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
LDYKYRLSHF TTPILLLFVS SPVSSVFHYQ MGGNTNSPCA SCKLLRRRCA KDCIFSPYFP 60 SNDPQKFAIV HKVFGASNVS KMLQELPIQQ RSDAVSSLVY EAHARVKDPV YGCVGAISYL 120 QNQVSDLQMQ LAVAQAEILC LQMQHEPVMQ NPDIALDHKY QTLFTLFTLF TF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-48	34	139	7	112	LOB family transfactor Ramosa2.1
5ly0_B	6e-48	34	139	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA31188

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CR378662	8e-67	CR378662.1 M.truncatula DNA sequence from clone MTH2-41N19 on chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003600972.1	4e-81	LOB domain-containing protein 12
Swissprot	Q8LBW3	3e-72	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A2K3MS69	4e-91	A0A2K3MS69_TRIPR; LOB domain-containing protein 12-like
STRING	AES71223	1e-80	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1664	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	8e-74	LBD family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA31188

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]