PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA31220
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 403aa    MW: 46059.6 Da    PI: 7.5548
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA31220genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.4e-1552106148
                                TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmg......kgRtlkqcksrwqkyl 48 
                                +g+W++eEd +l+ +++q+G+g +W t ++++       ++R++k+c++rw++yl
  Tp57577_TGAC_v2_mRNA31220  52 KGPWSPEEDAKLKSYIQQHGTGgNWITLPQKIVfifelgLKRCGKSCRLRWLNYL 106
                                79***************************************************97 PP
2Myb_DNA-binding34.25.8e-11113188246
                                SSS-HHHHHHHHHHHHHTTTT................................-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   2 grWTteEdellvdavkqlGgg................................tWktIartmgkgRtlkqcksrwqk 46 
                                g +T+eEd ++ ++  + G++                                +W+ Ia  ++ gRt++++k++w++
  Tp57577_TGAC_v2_mRNA31220 113 GGFTEEEDNIICNLYIRIGSRshiniypkvsvlarkiefdelifvcdahthirRWSVIAGQLP-GRTDNDIKNYWNT 188
                                569************************************************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.94947110IPR017930Myb domain
SMARTSM007171.6E-1051108IPR001005SANT/Myb domain
SuperFamilySSF466891.54E-2052110IPR009057Homeodomain-like
PfamPF002491.1E-1352106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2353113IPR009057Homeodomain-like
CDDcd001671.79E-754106No hitNo description
SMARTSM007179.5E-8111192IPR001005SANT/Myb domain
PfamPF002496.4E-8113188IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-19114130IPR009057Homeodomain-like
PROSITE profilePS512949.589141194IPR017930Myb domain
CDDcd001674.15E-5152188No hitNo description
SuperFamilySSF466891.54E-20162191IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-19163194IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
LDSSLFSSLS LFLFLFLSLN LSYSEKGYSK ITINQKSNMG RAPCCDKANV KKGPWSPEED  60
AKLKSYIQQH GTGGNWITLP QKIVFIFELG LKRCGKSCRL RWLNYLRPNI KHGGFTEEED  120
NIICNLYIRI GSRSHINIYP KVSVLARKIE FDELIFVCDA HTHIRRWSVI AGQLPGRTDN  180
DIKNYWNTKL KKKLLGKYRK EQQLQVRRNG RKSESSSSNL VYENTTQQHM LNPYWPSNNI  240
PMHLPPLTYS NQQGHTPPSF NDQDSIRKLL IKLGGRFSNE DEDCYQPILD HEFNFQFPDN  300
GVSAMQQIHE EHIGSSSGCT SSIMNNNHQL LQYFSDQSQS YDHQYYGEGV TGQELVQEQG  360
SFTATTTTSS NNNYSQKLSG LEFIYGEDMD GTICSNWGET EL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-185219458159MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-185219458159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA31220
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150369e-41AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013461827.11e-138transcription factor RAX3
RefseqXP_024633844.11e-138transcription factor RAX3
TrEMBLA0A2K3LHH40.0A0A2K3LHH4_TRIPR; Transcription factor RAX3-like protein
STRINGXP_007136795.11e-117(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.11e-67myb domain protein 84