PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA31221

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bZIP

Protein Properties

Length: 147aa MW: 16737 Da PI: 6.525

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA31221	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	38.7	2.2e-12	58	103	4	49
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 ++ rr+q+NRe+ArrsR RKk +e+L+++ L+ eN++Lk++l Tp57577_TGAC_v2_mRNA31221 58 ERKLRRMQSNRESARRSRCRKKTHLENLTNRLNRLKIENQQLKNQL 103 5789***************************************665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.1E-10	52	104	No hit	No description
SMART	SM00338	1.5E-11	55	119	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.703	57	104	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.0E-10	58	103	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.54E-11	59	113	No hit	No description
CDD	cd14702	7.62E-16	60	110	No hit	No description
PROSITE pattern	PS00036	0	62	77	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
MLFQTEEAVQ LPYPPVLETM LSESEIQYLI SLINQPEDPT SPSSGSQGSN RTVYSSEERK 60 LRRMQSNRES ARRSRCRKKT HLENLTNRLN RLKIENQQLK NQLAFTMNQH LLLSLENDQL 120 ISESVDLLAT LSDLCTILSN TSITMP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA31221

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013461806.1	2e-72	basic leucine zipper 4
TrEMBL	A0A2K3LAQ0	1e-99	A0A2K3LAQ0_TRIPR; Ocs element-binding factor 1-like protein
STRING	GLYMA06G05111.1	5e-63	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5996	30	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49760.1	2e-21	basic leucine-zipper 5

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA31221