PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA31349

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 139aa MW: 15995.2 Da PI: 8.7888

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA31349	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.1	1.4e-18	55	139	1	76
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgk 75 +fY++YA+ vGFsvr s++ k+k+ ++ ++ +vCskeg++ee+k + + +++r+++ tr gCka+++ k++++gk Tp57577_TGAC_v2_mRNA31349 55 DFYKNYAHAVGFSVRSSSEIKEKDGVNVRWKYLVCSKEGFKEEKKIDtpkllvtenNLSKSRKKKLTRQGCKARIVFKRTDEGK 138 6****************************************99999*998888999***************99988 PP FAR1 76 w 76 + Tp57577_TGAC_v2_mRNA31349 139 Y 139 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.8E-16	55	139	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MNAIMNNFYE MDSASPSKEF DDLENDTPEE WIPPCGNELK PVIGKVFDTL TQGVDFYKNY 60 AHAVGFSVRS SSEIKEKDGV NVRWKYLVCS KEGFKEEKKI DTPKLLVTEN NLSKSRKKKL 120 TRQGCKARIV FKRTDEGKY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA31349

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024626623.1	6e-52	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A2Q1A1	6e-49	A2Q1A1_MEDTR; FAR1; Zinc finger, SWIM-type

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15907	3	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	5e-12	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA31349