PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA31358

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Dof

Protein Properties

Length: 220aa MW: 24181.4 Da PI: 9.2966

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA31358	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.3	6.7e-38	28	87	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++l+cprCdstntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGgg+rkn k+s Tp57577_TGAC_v2_mRNA31358 28 KENLPCPRCDSTNTKFCYYNNYNYSQPRHFCKGCRRYWTQGGTLRDIPVGGGTRKNAKRS 87 6889****************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-29	24	85	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-32	29	85	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.984	31	85	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	33	69	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MPSSDSGESR RSTQPQNRPG PGAPGPEKEN LPCPRCDSTN TKFCYYNNYN YSQPRHFCKG 60 CRRYWTQGGT LRDIPVGGGT RKNAKRSRTQ HIAVTSSSSC SVVSSAPEHH HQYQSMTPIS 120 AXXXXXXXXX XXXXXXXXXX XXXXXXXQQQ HSRELWRIAC FRTGWGFPGM VDGSNIGGVP 180 VVSSNLWQLE GGEGGFVGGG DHYFSWPGLA ISTPVNGLK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA31358

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF767899	6e-56	JF767899.1 Trifolium alexandrinum microsatellite TaSSR402 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003518090.1	7e-73	dof zinc finger protein DOF3.4
TrEMBL	A0A2K3N400	5e-87	A0A2K3N400_TRIPR; Dof zinc finger protein
STRING	GLYMA02G06970.2	3e-72	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2801	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	3e-41	OBF binding protein 1

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA31358