PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA31359
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 169aa    MW: 18900.5 Da    PI: 10.9079
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA31359genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00123860123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               ++C+ C++ Fs+   L  H  +H
  Tp57577_TGAC_v2_mRNA31359 38 FECTTCNRKFSSFQALGGHRASH 60
                               89**********99999998887 PP
2zf-C2H211.60.0008488108323
                                ETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                                C +Cgk Fs    L  H+r+H
  Tp57577_TGAC_v2_mRNA31359  88 CYICGKQFSIGQALGGHMRRH 108
                                99******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.3463865IPR007087Zinc finger, C2H2
SMARTSM003550.183860IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.64E-838108No hitNo description
PfamPF139121.8E-113862IPR007087Zinc finger, C2H2
PROSITE patternPS0002804060IPR007087Zinc finger, C2H2
PROSITE profilePS501579.43286108IPR007087Zinc finger, C2H2
SMARTSM003555.786108IPR015880Zinc finger, C2H2-like
PfamPF139129.6E-986109IPR007087Zinc finger, C2H2
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MKRQRDERVG NIDLANCVIL LSHPKEAKHK KHFGPVDFEC TTCNRKFSSF QALGGHRASH  60
KKPKLESTKL KLQSQTLGLM NKPKIHGCYI CGKQFSIGQA LGGHMRRHRI ALNKGCCLVK  120
KNKVVGKVPI LKRSNSKRIM CLDLNLTPLQ NDLKLLFGNM APKVDSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA31359
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468307.13e-98zinc finger protein ZAT11
SwissprotQ9SLD41e-42ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A072VJY77e-97A0A072VJY7_MEDTR; Cys2-His2 zinc finger transcription factor
STRINGXP_004495268.11e-94(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.16e-45C2H2 family protein