PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA31360
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family Dof
Protein Properties Length: 342aa    MW: 37943.7 Da    PI: 7.8219
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA31360genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.31.9e-3964122260
                     zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 
                                ++++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk+
  Tp57577_TGAC_v2_mRNA31360  64 NQQHLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKS 122
                                67899****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-2663121IPR003851Zinc finger, Dof-type
PfamPF027014.1E-3366122IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.51668122IPR003851Zinc finger, Dof-type
PROSITE patternPS01361070106IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MKETTLPLME EELEEFYFNN QLLNLLLLLH VHLPQPXXXX XXXXXXXXXX TATTTPTATT  60
TSENQQHLRC PRCDSSNTKF CYYNNYNLTQ PRHFCKTCRR YWTKGGALRN VPIGGGCRKN  120
KSIGMSNTAA KTTTNKMKTV ASEFFRSASS QGFDHVVTPP SQILWGSPQN SHILSLFRSS  180
QNQSPNPNHV KEEGNNSLLG SHISHMMTSQ PLISSNVYDD GVGHVLCNPF WRNNHENQTQ  240
QLQNNGGFVL GEQQQQHHQN SGIQELYQKL RSSTTSSSGN NYCSEIAASS PTVLLGNVAS  300
NPSSISNILE TTSVTGGELG YWNPIPTLTW SDLPTTNGAY P*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA31360
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6915331e-168EF691533.1 Trifolium repens clone CloverSSR-6_D11_045_1 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013446470.11e-157dof zinc finger protein DOF2.4
TrEMBLA0A2K3LFN50.0A0A2K3LFN5_TRIPR; Dof zinc finger protein
STRINGXP_004509179.11e-112(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72193247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07640.14e-33Dof family protein