PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA31372
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 420aa    MW: 46181.9 Da    PI: 8.0095
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA31372genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.5e-113258127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                               ++++ C+++ rtG C++G++C+F+H+p
  Tp57577_TGAC_v2_mRNA31372 32 PGEPDCSYYIRTGLCRFGATCRFNHPP 58
                               5789*********************97 PP
2zf-CCCH39.87.6e-1378103227
                                -S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                ++++C+++++tGtCk+G++C+F+H++
  Tp57577_TGAC_v2_mRNA31372  78 GQPECQYYLKTGTCKFGATCRFHHPK 103
                                5799********************96 PP
3zf-CCCH36.67.5e-12125149327
                                S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                +++C +++rtG+Ck+G++CkF+H++
  Tp57577_TGAC_v2_mRNA31372 125 ESECAYYLRTGQCKFGNTCKFHHPQ 149
                                679********************97 PP
4zf-CCCH38.61.8e-12281306227
                                -S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                ++++C+f+++tG Ck+G+ C+F+H++
  Tp57577_TGAC_v2_mRNA31372 281 DQPECQFYMKTGDCKFGAVCRFHHPR 306
                                689*********************96 PP
5zf-CCCH38.22.5e-12326352127
                                --S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                ++++lC f++r+G+Ck+G++CkF H++
  Tp57577_TGAC_v2_mRNA31372 326 PGEPLCVFYSRYGICKFGPSCKFDHPM 352
                                589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-43158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9763259IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-83358IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-53659IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-43757IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-676103IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.48876104IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-1079103IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-680105IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-482102IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4122149IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878122150IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6123150IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9125149IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4128148IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-5279306IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.624279307IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-9281306IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5282308IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4285307IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821325353IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7325352IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-9327352IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5328352IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-4330350IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MDQFDSIPQE AMWQMNLRSS ETMESGPYPE HPGEPDCSYY IRTGLCRFGA TCRFNHPPNR  60
KLAIATARMK GEFPERLGQP ECQYYLKTGT CKFGATCRFH HPKDKAGIAG RVALNILGYP  120
LRPNESECAY YLRTGQCKFG NTCKFHHPQP NNMVLSMRGS PAYPTVQSPT TPGQQSYAAG  180
ITNWSSSSYI PSPRWQGPSS YAPLILPQGM VSVPGWSTYN GQMGSDSPQQ TMRNDQTYGT  240
SHQGEPENAG LQGAYSQYRS GSVPVGFYAL QRENIFPERP DQPECQFYMK TGDCKFGAVC  300
RFHHPRERTV PTPDCILSPI GLPLRPGEPL CVFYSRYGIC KFGPSCKFDH PMGIFTYNVP  360
ASPLADASGR RLLGSSSGTA ALSLSSEGLV ESGSAKPRRL SLSETRPIPS GDDNIDDEG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA31372
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6241380.0EU624138.1 Medicago sativa zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003624157.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLG7KRG60.0G7KRG6_MEDTR; Zinc finger CCCH domain protein
STRINGAES803750.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-176zinc finger protein 1