PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA31441

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

VOZ

Protein Properties

Length: 489aa MW: 54505.4 Da PI: 6.4547

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA31441	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	356.7	9.2e-110	245	463	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaa 84 pppsafl+pkcalwdc rpaq +++q yc s h++la+ eglpg+tp+lrp+gid+kdg+lfaa+ ak+ gkevgip+cegaa Tp57577_TGAC_v2_mRNA31441 245 PPPSAFLSPKCALWDCIRPAQ--KQCQGYCCSSHEHLAISEGLPGMTPILRPGGIDVKDGPLFAAVLAKTMGKEVGIPKCEGAA 326 89****************8..68******************************************************* PP VOZ 85 takspwnaaelfdlsll.....egetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpss 163 ++k+pwna+ +f + ++ wlffdkprraf+sg rkqrslpdy+grgwhesrkqvmke+gg+krsyymdpqp++ Tp57577_TGAC_v2_mRNA31441 327 STKAPWNASVFFFFFFFlxxxxXXXXXXXWLFFDKPRRAFDSGTRKQRSLPDYHGRGWHESRKQVMKEHGGQKRSYYMDPQPPN 410 *****98766544121113345679*************************************************98 PP VOZ 164 sfewhlyeyeineldalalyrlelklvdekksakgkvskdsladlqkklgrlta 217 +whlyeyein+ d +alyrlelklvd+kks+kgkvskdsl+dl++k+g+lta Tp57577_TGAC_v2_mRNA31441 411 R-DWHLYEYEINSHDGCALYRLELKLVDKKKSPKGKVSKDSLNDLENKMGKLTA 463 5.9***********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MMKGNSKGKY GSSSSSSQKS TKEKEKHLVD KIQGIFTNLQ SARKESRAND IVICEEQMHQ 60 LLREWKAELE SPATSLADGS LGSFTGELAQ LLQEIEEKDD ATSPFTSPVP LKTGLHQNNI 120 SDGNYPFFLE NCFENNQTLD HTFKGSASSL FNSPLNNSDM AQLDFHQFGL NQDMDHNAVG 180 HNSDLIGRFN LYQDQSLGHN TEIKNSESTQ FSFEEGIDCS QFFGDNDTTT FGDNLIPNIL 240 PNICPPPSAF LSPKCALWDC IRPAQKQCQG YCCSSHEHLA ISEGLPGMTP ILRPGGIDVK 300 DGPLFAAVLA KTMGKEVGIP KCEGAASTKA PWNASVFFFF FFFLXXXXXX XXXXXWLFFD 360 KPRRAFDSGT RKQRSLPDYH GRGWHESRKQ VMKEHGGQKR SYYMDPQPPN RDWHLYEYEI 420 NSHDGCALYR LELKLVDKKK SPKGKVSKDS LNDLENKMGK LTAAPLPDNG KSIEGKTDAK 480 SENVGLPA*

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MMKGNSKGKY GSSSSSSQKS TKEKEKHLVD KIQGIFTNLQ SARKESRAND IVICEEQMHQ  60
LLREWKAELE SPATSLADGS LGSFTGELAQ LLQEIEEKDD ATSPFTSPVP LKTGLHQNNI  120
SDGNYPFFLE NCFENNQTLD HTFKGSASSL FNSPLNNSDM AQLDFHQFGL NQDMDHNAVG  180
HNSDLIGRFN LYQDQSLGHN TEIKNSESTQ FSFEEGIDCS QFFGDNDTTT FGDNLIPNIL  240
PNICPPPSAF LSPKCALWDC IRPAQKQCQG YCCSSHEHLA ISEGLPGMTP ILRPGGIDVK  300
DGPLFAAVLA KTMGKEVGIP KCEGAASTKA PWNASVFFFF FFFLXXXXXX XXXXXWLFFD  360
KPRRAFDSGT RKQRSLPDYH GRGWHESRKQ VMKEHGGQKR SYYMDPQPPN RDWHLYEYEI  420
NSHDGCALYR LELKLVDKKK SPKGKVSKDS LNDLENKMGK LTAAPLPDNG KSIEGKTDAK  480
SENVGLPA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA31441

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC171618	1e-172	AC171618.20 Medicago truncatula clone mth2-144n17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004505530.1	0.0	transcription factor VOZ1
Refseq	XP_004505531.1	0.0	transcription factor VOZ1
Refseq	XP_012572680.1	0.0	transcription factor VOZ1
Refseq	XP_027191648.1	0.0	transcription factor VOZ1
Swissprot	Q9SGQ0	1e-127	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A2K3PFJ7	0.0	A0A2K3PFJ7_TRIPR; Transcription factor VOZ1-like protein
STRING	XP_004505529.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1498	34	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-105	vascular plant one zinc finger protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA31441

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]