PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA31450
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ARF
Protein Properties Length: 594aa    MW: 65938.1 Da    PI: 6.67
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA31450genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.31.4e-18163264299
                                EEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                         B3   2 fkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                                +k+lt+sd+++ g +++p+++a+ +        ++  s++l ++  +g  +W+ ++ yr+k++r+++t+GW  Fv+ ++L +gD
  Tp57577_TGAC_v2_mRNA31450 163 IKILTQSDSNNGGGFSVPRQCADLIfpeldfT-DPMPSQQLYINEVHGgGVWKYTHVYRGKPKRHLFTTGWTPFVNGKKLVAGD 245
                                799*******************888**99962.4445567888886555*********************************** PP

                                EEEEEE-SSSEE..EEEEE-S CS
                         B3  79 fvvFkldgrsefelvvkvfrk 99 
                                +vvF   ++s+++++v+++r+
  Tp57577_TGAC_v2_mRNA31450 246 TVVFL--KNSTGNMFVGIRRN 264
                                *****..779********996 PP
2Auxin_resp51.15.7e-18320394374
                 Auxin_resp   3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl...sGtvvgvsdldpvrW 74 
                                ++a+++++FevvY+P   +s+Fvv+++ v +a+k+ +  GmR+k+ + +e++s++ l   +G ++ vs + + r 
  Tp57577_TGAC_v2_mRNA31450 320 ERAEKNMAFEVVYYPTPNWSDFVVEAKVVDEAMKIGWESGMRVKLVLKKEECSKKPLcqpQGAISNVSIVPNWRM 394
                                578999************************************************9988899****9999665433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-27153265IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-22157270IPR015300DNA-binding pseudobarrel domain
CDDcd100174.76E-15161263No hitNo description
SMARTSM010198.3E-12162265IPR003340B3 DNA binding domain
PROSITE profilePS5086311.547162265IPR003340B3 DNA binding domain
PfamPF023623.3E-16163264IPR003340B3 DNA binding domain
PfamPF065079.6E-15320396IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MTHSLSIYSF IHSSNVSKQL YQTSFPLITL SLSLSLSLSI YSSVCNINTT NHHVSSSSTT  60
PCPPQXXXXI PKLHSKVYYF PLGHLEHACP FPNPKTISII HNNRPYIPCI ITAVDLLSDP  120
HTDEVFAKLI LTPITDTQHV QEHPVVPDQE DDDDGGDKVV SYIKILTQSD SNNGGGFSVP  180
RQCADLIFPE LDFTDPMPSQ QLYINEVHGG GVWKYTHVYR GKPKRHLFTT GWTPFVNGKK  240
LVAGDTVVFL KNSTGNMFVG IRRNMKFAAA EAAAAQKKKN DKVEGFSRNG KRGNVTEEAA  300
VXXXXXXXXX XXXXXXXXXE RAEKNMAFEV VYYPTPNWSD FVVEAKVVDE AMKIGWESGM  360
RVKLVLKKEE CSKKPLCQPQ GAISNVSIVP NWRMLKVNWD EPEISQYPNC VNPWQVELIS  420
QVPALYLPFH QTKRPRLTMG EPFIPMIEFP CSTMESFNQT LLNCDSFPAG MQGARHDHLS  480
AASSSSNLLN YNGYGFFVNS IMAGLSTMPK EINIGSSTSV DSSSPHNNFG TNYVQTHNDN  540
TERVKPSSIK LFGKTIHIDE SDFTDSGIKG SEDGSNGCSE IEVVDKICTG NAQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A2e-457041734353Auxin response factor 1
4ldw_A2e-457041734353Auxin response factor 1
4ldw_B2e-457041734353Auxin response factor 1
4ldx_A2e-457041734353Auxin response factor 1
4ldx_B2e-457041734353Auxin response factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA31450
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003614915.20.0auxin response factor 17
TrEMBLA0A2Z6NJL20.0A0A2Z6NJL2_TRISU; Auxin response factor
STRINGAES978730.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-99auxin response factor 17