PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA31453

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bZIP

Protein Properties

Length: 151aa MW: 17400.8 Da PI: 8.6809

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA31453	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.7	3.9e-11	82	110	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k+ rr ++NReAAr++R+RKka++++Le+ Tp57577_TGAC_v2_mRNA31453 82 KVLRRQAQNREAARKCRLRKKAYVQQLET 110 789************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.5E-10	73	124	No hit	No description
SMART	SM00338	3.6E-4	78	142	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.5E-9	82	111	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.49E-8	84	115	No hit	No description
PROSITE pattern	PS00036	0	85	100	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MNSSSLSTEL IAPKRMDIYE PFHQLSMWED SFKVDHSTLN SIASPMLKMN ISSLENKCEY 60 IPHESREPSG DDQETTEEPV PKVLRRQAQN REAARKCRLR KKAYVQQLET SRLKLMQLEL 120 EIEKTRKQGL YRSNSFDVSY MRSSGIINSG *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA31453

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003614897.2	3e-77	transcription factor TGA3 isoform X2
Refseq	XP_024640014.1	2e-77	transcription factor TGA3 isoform X4
TrEMBL	A0A2K3NF44	1e-105	A0A2K3NF44_TRIPR; Transcription factor TGA7-like protein
STRING	AES97855	6e-72	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15887	5	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	8e-36	bZIP family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA31453