PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA31510
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 305aa    MW: 33733.5 Da    PI: 4.8892
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA31510genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2569.8e-183988255
                        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                ykGVr++  +g+WvAeIr+p   + r +r +lg+f t  eAa a++ a++kl+g
  Tp57577_TGAC_v2_mRNA31510 39 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFETSHEAALAYDTAARKLYG 88
                               69****999.**********8...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.12E-313898No hitNo description
PROSITE profilePS5103222.1553996IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-303997IPR001471AP2/ERF domain
SMARTSM003803.1E-3439102IPR001471AP2/ERF domain
PfamPF008471.2E-123988IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-203996IPR016177DNA-binding domain
PRINTSPR003671.6E-94051IPR001471AP2/ERF domain
PRINTSPR003671.6E-96278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MMKSGMGIEE RKQLKKPAQA SSRKGCMRGK GGPENASCTY KGVRQRTWGK WVAEIREPNR  60
GARLWLGTFE TSHEAALAYD TAARKLYGAE AKLNLPELST PYVHSPKKKS SSSATITQTP  120
HMQQPQIINH KPIKTNFNFT SLNSCNNTNN NIHNHNANNN SVFVSLPSQQ IGDVAPPIYD  180
SIPIMSLPME EQIEQISLQG DDLSFQYDNS NGTVESNNDL CFQYDYSEGM MESNNQNDSF  240
FGTLNYETMP VVDDDSIWKE AAMSLDSALS MDFQIIADAD GIYNSGANFG EVGALDSLQT  300
PWCM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-204096360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA31510
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1595351e-122AC159535.12 Medicago truncatula clone mth2-152f22, complete sequence.
GenBankAC1600131e-122AC160013.22 Medicago truncatula clone mth2-162b23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003589344.11e-102dehydration-responsive element-binding protein 2D
TrEMBLA0A2K3MMA20.0A0A2K3MMA2_TRIPR; Dehydration-responsive element-binding protein 2d-like
STRINGAES595951e-101(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.11e-50ERF family protein