PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA31534

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

SRS

Protein Properties

Length: 376aa MW: 43648.4 Da PI: 6.1023

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA31534	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	88.9	1.2e-27	194	259	5	70
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaea 70 +++C++CGnqakkdC+++RCR CCk++gf+C+th++stW+pa++rr ++ + ++++ ++++++ Tp57577_TGAC_v2_mRNA31534 194 GSKCEECGNQAKKDCEYSRCRNCCKNKGFNCQTHIRSTWIPADRRRRHRMDQPPNQQHQLHEHKKH 259 579***************************************998776555555555554444333 PP
2	DUF702	64.8	3.1e-20	252	323	84	155
DUF702 84 salsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGleek 155 + +++k ++ ++ +++e ++P+ v+s+a cv+++s+dd +e+aYqt+v+igG vf+GiLydqGl+++ Tp57577_TGAC_v2_mRNA31534 252 QLHEHKKHKQINPFSSFEEFKFPAVVNSMATLTCVQMRSMDDRVNEMAYQTSVEIGGRVFNGILYDQGLDQQ 323 344455555666677788888************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.1E-40	194	321	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	5.3E-24	196	238	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.9E-16	272	320	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MENLSSTTSS SSSSMQFLIL EQVQFVKVNN DDSLLQWELV DVVEAEEEQE QEEEQTVDVD 60 DHVISWSVSS RIDDPIERIN HPVLHLDAYV EDHNHDGVYR EEQVNHDIDD EEDDGDDDLD 120 DELVPWNIGN KLGRQRMRKL GKRVSSKMNN SKRSPYLFVS PGCVRGKHGM GLKHFKILKR 180 RMSTTQLREE VLQGSKCEEC GNQAKKDCEY SRCRNCCKNK GFNCQTHIRS TWIPADRRRR 240 HRMDQPPNQQ HQLHEHKKHK QINPFSSFEE FKFPAVVNSM ATLTCVQMRS MDDRVNEMAY 300 QTSVEIGGRV FNGILYDQGL DQQSFNNNTR GDYSIDNIHQ QQNLNHFYDG TTASHHRLLY 360 PPPHPLSSFR PNMPY*

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MENLSSTTSS SSSSMQFLIL EQVQFVKVNN DDSLLQWELV DVVEAEEEQE QEEEQTVDVD  60
DHVISWSVSS RIDDPIERIN HPVLHLDAYV EDHNHDGVYR EEQVNHDIDD EEDDGDDDLD  120
DELVPWNIGN KLGRQRMRKL GKRVSSKMNN SKRSPYLFVS PGCVRGKHGM GLKHFKILKR  180
RMSTTQLREE VLQGSKCEEC GNQAKKDCEY SRCRNCCKNK GFNCQTHIRS TWIPADRRRR  240
HRMDQPPNQQ HQLHEHKKHK QINPFSSFEE FKFPAVVNSM ATLTCVQMRS MDDRVNEMAY  300
QTSVEIGGRV FNGILYDQGL DQQSFNNNTR GDYSIDNIHQ QQNLNHFYDG TTASHHRLLY  360
PPPHPLSSFR PNMPY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA31534

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024636124.1	3e-79	protein SHI RELATED SEQUENCE 3
TrEMBL	A0A2K3NYR4	1e-129	A0A2K3NYR4_TRIPR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9969	25	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21400.1	2e-38	SHI-related sequence3

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA31534