PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA31840
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 151aa    MW: 17233.7 Da    PI: 9.9522
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA31840genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.11.4e-079491055
                               HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                               r RR+++ ++   L++l+P++     kK++ a+ Le+A +Y+k Lq
  Tp57577_TGAC_v2_mRNA31840  9 RDRRQKLSEKTRCLQKLMPWD-----KKMDQATLLEEASKYVKFLQ 49
                               89******************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.503148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-5554IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-9856IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.66E-6851No hitNo description
SuperFamilySSF474595.1E-10861IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-5949IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
LIRQSKFARD RRQKLSEKTR CLQKLMPWDK KMDQATLLEE ASKYVKFLQA QHSVLESMPS  60
HSTTNYCGEN GGGATNGVFG DLEMLNRNQA LQVLVNSPVA QTKLCSQGYC VFSMEQFYLL  120
RKLSERRQLQ QQQQKNLALS DHGSSKTFFH *
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA31840
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1691743e-41AC169174.3 Medicago truncatula chromosome 2 BAC clone mth2-143k13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004487384.11e-68transcription factor bHLH117
TrEMBLA0A2K3K1P31e-105A0A2K3K1P3_TRIPR; Transcription factor bHLH117
STRINGXP_004487384.15e-68(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134262124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.12e-27bHLH family protein