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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Tp57577_TGAC_v2_mRNA31847 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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| Family |
GRAS |
| Protein Properties |
Length: 457aa MW: 51482.1 Da PI: 5.9379 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp57577_TGAC_v2_mRNA31847 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 280 | 6.9e-86 | 50 | 441 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalkl. 83
++lLl+cA a++s+d +laq++++ l++ asp gd++qRl++ f++AL +r +r ++ + + + ++ + + +++++l
Tp57577_TGAC_v2_mRNA31847 50 EKLLLHCASALESNDITLAQQVMWVLNNVASPLGDTNQRLTSWFLRALISRASRICPVSM---NFKGSN--IiQRRLMSVTELa 128
689***************************************************444333...233222..2133333344447 PP
GRAS 84 .fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetge 163
++++ P+++f++ + N+ I +a++g +rvHi+Df+i+ ++QWp+++++La+ +egppslRiT+ + + +++e+g+
Tp57577_TGAC_v2_mRNA31847 129 gYVDLIPWHRFGFCASNNEIFKAIKGFKRVHILDFSITPCMQWPTFIDSLAKLQEGPPSLRITVPFFRPMVpplVNISIHEVGQ 212
7**************************************************************9655444467999******** PP
GRAS 164 rLakfAeelgvpfefnvl....................vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erde 226
rL +fA+ +vpfefnv+ ++ l+ l++++L+++++Eal++n++ l +l d++ s++ rd+
Tp57577_TGAC_v2_mRNA31847 213 RLGNFAKFKDVPFEFNVIgdnvsltseelsniestnfhFESMLNLLNPNMLSLREDEALVINCQNWLRYLSDDRKSQNIsIRDA 296
************************9999999988888656688889*************************9998888768*** PP
GRAS 227 vLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhe 310
+++lvk+l+P++v +v++++d++s+s+ r++ ++++ + fd+l++ lp++s +r+ E +g++i+n+++ eg++r+er e
Tp57577_TGAC_v2_mRNA31847 297 FINLVKGLNPQIVLLVDEDCDLSSSSLTSRITASFNHLWIPFDALDTFLPKDSCQRTEFESD-IGQKIENIISYEGNQRIERLE 379
**************************************************************.********************* PP
GRAS 311 tlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
+ + ++r+++aG+ +vp+ +++ ++k ll +++ g+ +++++ lvl+Wk+++ v ++aW
Tp57577_TGAC_v2_mRNA31847 380 SGLQMSQRMKNAGYFSVPFCDETILEVKGLLDEHA-SGWGMKKDESMLVLTWKGNSCVYATAW 441
***********************************.8899*********************** PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 457 aa
Download sequence Send
to blast |
MHVHMKAELK AASISFQNQT LFNTHQTTPP LPEPEALKGC LGSLDGACIE KLLLHCASAL 60
ESNDITLAQQ VMWVLNNVAS PLGDTNQRLT SWFLRALISR ASRICPVSMN FKGSNIIQRR 120
LMSVTELAGY VDLIPWHRFG FCASNNEIFK AIKGFKRVHI LDFSITPCMQ WPTFIDSLAK 180
LQEGPPSLRI TVPFFRPMVP PLVNISIHEV GQRLGNFAKF KDVPFEFNVI GDNVSLTSEE 240
LSNIESTNFH FESMLNLLNP NMLSLREDEA LVINCQNWLR YLSDDRKSQN ISIRDAFINL 300
VKGLNPQIVL LVDEDCDLSS SSLTSRITAS FNHLWIPFDA LDTFLPKDSC QRTEFESDIG 360
QKIENIISYE GNQRIERLES GLQMSQRMKN AGYFSVPFCD ETILEVKGLL DEHASGWGMK 420
KDESMLVLTW KGNSCVYATA WVPNEIRDHI GLNAHV*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC145218 | 0.0 | AC145218.29 Medicago truncatula clone mth2-34l18, complete sequence. |
