PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA31907
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 339aa    MW: 39103.5 Da    PI: 5.9605
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA31907genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.5e-173077148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +grWT+eEd++l d++kq G g+W+  +++ g+ R++k+c++rw +yl
  Tp57577_TGAC_v2_mRNA31907 30 KGRWTAEEDKILTDYIKQNGEGSWRFLPKKAGLLRCGKSCRLRWINYL 77
                               79******************************99************97 PP
2Myb_DNA-binding49.59.5e-1684128248
                                SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                g+  + E+e++v++++ lG++ W+ Ia++++ gRt++++k++w+++l
  Tp57577_TGAC_v2_mRNA31907  84 GNIAPHEEEIIVKLHAVLGNR-WSVIASHLP-GRTDNEIKNYWNSHL 128
                                566689***************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-202179IPR009057Homeodomain-like
PROSITE profilePS5129415.6162577IPR017930Myb domain
SuperFamilySSF466891.28E-2727124IPR009057Homeodomain-like
SMARTSM007179.9E-122979IPR001005SANT/Myb domain
PfamPF002495.0E-143077IPR001005SANT/Myb domain
CDDcd001671.66E-83277No hitNo description
PROSITE profilePS5129423.51678132IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-2480132IPR009057Homeodomain-like
SMARTSM007175.9E-1582130IPR001005SANT/Myb domain
PfamPF002494.2E-1388128IPR001005SANT/Myb domain
CDDcd001679.55E-1088128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MQQEYSTIAI LVYVTNMGRA PCCEKIGLKK GRWTAEEDKI LTDYIKQNGE GSWRFLPKKA  60
GLLRCGKSCR LRWINYLRAD VKRGNIAPHE EEIIVKLHAV LGNRWSVIAS HLPGRTDNEI  120
KNYWNSHLRR KIYCFMRSIN ESPPPLPPLD MASTSKKLFQ GKKINPKIEE NNNMSLEPIM  180
PKEVEEISMN NVFYEMEGNN NNINNSILSY PSKINELAID EGLGPYKWLD DEIMKLRTMF  240
ENGMRSYVTH HENNEKGINE YDYKNMHVEI MEKNKEMKSD IIWGESSNGE CGELYNCCSS  300
GNSATDYDQL SDWDFCEEEK MKSCLWGTGI GEIMNGFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-24281325108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFlavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1. Controls flavonol biosynthesis primarily in cotyledons and leaves (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA31907
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Triggered by HY5 in response to light and UV-B. {ECO:0000269|PubMed:19895401}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003594801.11e-176transcription factor MYB14
SwissprotQ9FJ075e-71MY111_ARATH; Transcription factor MYB111
TrEMBLG7IMV71e-174G7IMV7_MEDTR; Myb transcription factor
STRINGAES650521e-175(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.13e-72myb domain protein 111
Publications ? help Back to Top
  1. Pandey A,Misra P,Bhambhani S,Bhatia C,Trivedi PK
    Expression of Arabidopsis MYB transcription factor, AtMYB111, in tobacco requires light to modulate flavonol content.
    Sci Rep, 2014. 4: p. 5018
    [PMID:24846090]
  2. Lotkowska ME, et al.
    The Arabidopsis Transcription Factor MYB112 Promotes Anthocyanin Formation during Salinity and under High Light Stress.
    Plant Physiol., 2015. 169(3): p. 1862-80
    [PMID:26378103]
  3. Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
    The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors.
    Plant Physiol. Biochem., 2016. 102: p. 70-9
    [PMID:26913794]
  4. Zhou Z,Schenke D,Miao Y,Cai D
    Investigation of the crosstalk between the flg22 and the UV-B-induced flavonol pathway in Arabidopsis thaliana seedlings.
    Plant Cell Environ., 2017. 40(3): p. 453-458
    [PMID:28032363]
  5. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  6. Duan S, et al.
    Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana.
    Plant Sci., 2018. 268: p. 47-53
    [PMID:29362083]