PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA31914
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GATA
Protein Properties Length: 296aa    MW: 32283.2 Da    PI: 5.2059
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA31914genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.76.7e-18206241134
                       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                                C++Cgt++  Tp++Rrgp+g+++LCnaCGly++ +g
  Tp57577_TGAC_v2_mRNA31914 206 CTHCGTSSksTPMMRRGPSGPRSLCNACGLYWANRG 241
                                ********************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.7E-1070105IPR010399Tify domain
PROSITE profilePS5132014.81870105IPR010399Tify domain
PfamPF062003.8E-1274104IPR010399Tify domain
PfamPF062033.7E-16138180IPR010402CCT domain
PROSITE profilePS5101712.57138180IPR010402CCT domain
SMARTSM004014.6E-14200253IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.279200259IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-12202254No hitNo description
Gene3DG3DSA:3.30.50.101.9E-16204247IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.14E-16205249No hitNo description
PfamPF003201.8E-15206241IPR000679Zinc finger, GATA-type
PROSITE patternPS003440206233IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MEPSMFGNST PLNITGETED GSGPDSAIDG NHNIHFETVD DGSGGFVVED VTSDAVYGHG  60
GGNSELGIQR FEDSDQLTLS FRGQVYVFDS VTPDKVQSVL LLLGGCEQPQ ADATYVDPVS  120
QQSQRESMEY PKCSQSHRQA SLNRFRQKRK ERCFEKKVRY DVRQEVALRM QRNKGQFTSS  180
KKQDGANGWG TDQDSGQDDS QAETSCTHCG TSSKSTPMMR RGPSGPRSLC NACGLYWANR  240
GALRDLSKRH HELSIVPAEQ VDQGNSSDCG TATIPSRNNL AAFSENNNQA LVADR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA31914
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004490456.11e-165GATA transcription factor 25-like
SwissprotQ9LRH62e-81GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A2K3NY220.0A0A2K3NY22_TRIPR; GATA transcription factor 25-like protein
STRINGXP_004490456.11e-165(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.22e-76GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]