PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3214
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 261aa    MW: 28968.3 Da    PI: 7.2038
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3214genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.12.4e-09791072755
                       AP2  27 krkrfslgkfgtaeeAakaaiaarkkleg 55 
                               k++r++lg+f tae Aa+a+++a+  ++g
  Tp57577_TGAC_v2_mRNA3214  79 KKRRVWLGTFETAEAAARAYDQAAILMNG 107
                               46**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.19736115IPR001471AP2/ERF domain
SMARTSM003804.3E-1445121IPR001471AP2/ERF domain
PfamPF008474.3E-677107IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-1178116IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-1879116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
LLLSTPLSVL YSNFPHRHHN INIFSNITTL YSSYPHFHII LIHSQQRRQI WYNKQRSSEE  60
SGNASGALGC QKFATLCCKK RRVWLGTFET AEAAARAYDQ AAILMNGQSA KTNFPKKQGE  120
DDSAIDTSSN NNGGGDDSFL SPKALSELLS TKLRKYCKDP SPSLTCLRLD NDNSHIGVWQ  180
KRAGTHSDSN WVMRVELGGK KKTVESEIGS KEDVIDGGSN NGNADDIQNR VIVEEEERIA  240
LQMIEELLNW NYPCGSTSSN *
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA3214
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269|PubMed:15319479}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1498081e-167AC149808.12 Medicago truncatula clone mth2-154g23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003603408.23e-85LOW QUALITY PROTEIN: ethylene-responsive transcription factor SHINE 2
SwissprotQ3E9583e-55SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBLA0A2K3NVF61e-129A0A2K3NVF6_TRIPR; Ethylene-responsive transcription factor shine 3-like protein
STRINGAES736596e-85(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57633144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25390.27e-48ERF family protein
Publications ? help Back to Top
  1. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  2. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]