PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA32155

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

LBD

Protein Properties

Length: 164aa MW: 17800 Da PI: 6.2613

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA32155	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	25.3	4.3e-08	2	43	58	99
DUF260 58 msslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 ++sl+yeA r+ +P +Ga+g+++ +q+ +++ +e +l+++ Tp57577_TGAC_v2_mRNA32155 2 FKSLLYEAAGRLVNPTHGALGLFWIGQWSRCEATVESVLTGS 43 79*******************************999988766 PP

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
VFKSLLYEAA GRLVNPTHGA LGLFWIGQWS RCEATVESVL TGSNINDVTT VDGQTSSGTL 60 IAENHVLPTT SDIRHVARGT NVDIKEKTQF KRAESIFKPK PRVGWADNAT LLKSILENGS 120 LKIVEASSMI EKELNGAAET QVNFELTLGF NCQSSNDKKS YDN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA32155

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013452375.1	6e-75	LOB domain-containing protein 42
TrEMBL	A0A2K3KZU4	1e-114	A0A2K3KZU4_TRIPR; LOB domain protein
STRING	AES84556	4e-71	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14785	6	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68510.1	3e-17	LOB domain-containing protein 42

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA32155