PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA32204
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 728aa    MW: 79746.3 Da    PI: 6.1166
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA32204genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.4e-07303323526
                                --SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                +C++f++ G C++Gd C +aHg
  Tp57577_TGAC_v2_mRNA32204 303 PCPDFRK-GACRRGDMCEYAHG 323
                                8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0024839003666IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.201.8E-1736177IPR020683Ankyrin repeat-containing domain
CDDcd002041.61E-741172No hitNo description
SuperFamilySSF484031.52E-1641169IPR020683Ankyrin repeat-containing domain
PfamPF127962.0E-978152IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00383113IPR002110Ankyrin repeat
PROSITE profilePS5029715.64583172IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0031118150IPR002110Ankyrin repeat
PROSITE profilePS5008810.793118153IPR002110Ankyrin repeat
SMARTSM003564.0E-6298324IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-4302325IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582303325IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-5303323IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-4331361IPR000571Zinc finger, CCCH-type
SMARTSM0035624333356IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MCCESEGLKS AQSPSMTSDS QPRNNAMNHL TVGTEDAFAS LLELAANNDV EGFKRMIEYD  60
PTSVDEVGLW YGRRKGSKQM VNEERTPLMV AATYGSIDVM KLIISLSDVD INRPCGLDKS  120
TALHCAASGG AENAVDAAKL LLAAGADPNS VDANGDRPLD VIVYPPKLEF VKNSLEELLQ  180
TDDPSTGCNL RVITNSFNSY SPPLSASPEN GSPSPPPDLL LKLKSIDVPI SPAGSEKKEY  240
PVDPSLPDIK NSIYSTDEFR MYSFKVRPCS RAYSHDWTEC PFVHPGENAR RRDPRKYHYS  300
CVPCPDFRKG ACRRGDMCEY AHGVFECWLH PAQYRTRLCK DGINCSRRVC FFAHTAEELR  360
PLYVSTGSAV PSPRSSASSA MDFAAAMNML PGSPSSMSVM SPSPFTPPMS PSGNGISHNS  420
VPWPQPNIPA LHLPGSNLQS SRLRSSLNAR DIHMDEFEML SDYDQQQQLL NELACLSPRH  480
LNSNGLSRSG RMKPLNPSNL DDLFSAESSS PRYADPSLTS TVFSPTHKSA VFNQFQQQQN  540
MLSPVNTNFS PKNVDHHLLQ AASYGVQPSG RMSPRNVEPI SPMSSRMSML AQRDKQQQFR  600
SLSFREHGSN SMLAAAGSVN SWSKWESPNG KLDWAHNADE VGKLRRSSSF ELGNNGEEPD  660
LSWVQSLVKE SPTEIKEKLA TSISNAAPTG SSGEGLNMSA QMESVDHAVL GTWLEQMQLD  720
HLVAQQN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17178GRRKGSKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA32204
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1558850.0AC155885.2 Medicago truncatula chromosome 7 clone mth2-10p23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003625157.10.0zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2K3P2K80.0A0A2K3P2K8_TRIPR; Zinc finger CCCH domain-containing protein 30-like
STRINGAES813750.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]