PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3221
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 310aa    MW: 35488.2 Da    PI: 9.9805
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3221genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.3e-18124171253
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53 
                               +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ +
  Tp57577_TGAC_v2_mRNA3221 124 RYRGVRQRH-WGSWVSEIRHP-----IlkTRIWLGTFETAEDAARAYDEAARLM 171
                               69******9.**********8.....556*********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.27E-35123183No hitNo description
SuperFamilySSF541711.37E-20124183IPR016177DNA-binding domain
SMARTSM003806.5E-41124187IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-33124181IPR001471AP2/ERF domain
PfamPF008472.5E-11124172IPR001471AP2/ERF domain
PROSITE profilePS5103221.14124181IPR001471AP2/ERF domain
PRINTSPR003676.6E-11125136IPR001471AP2/ERF domain
PRINTSPR003676.6E-11147163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MPEVNASFPM ALPSYERYIG NDASFPWTQS SGWSVPLTPK SRVKKNKLRP KEKNLVGPSF  60
LIKLLLDPLE KSATFDTNPT TKTHHPSFSN TSSWFHNRTL YHSSKTLSEK NTFLFLNMAR  120
PQQRYRGVRQ RHWGSWVSEI RHPILKTRIW LGTFETAEDA ARAYDEAARL MCGTRARTNF  180
PYNPNVSQSS SSKLLSATLT AKLHRCYMAS LQITRPISLQ QPQKESSQSV MNSTNNVPLK  240
NSEEIDTTMR HENVNESEGN WVFKKVKVEN SQQFIKPLEE DHNHIEQMIQ ELLHYGSIEL  300
CSIIPSQAH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-18123185467ATERF1
3gcc_A8e-18123185467ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA3221
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1419540.0BT141954.1 Medicago truncatula clone JCVI-FLMt-6M2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003603319.21e-108protein PPLZ02
SwissprotQ94AW57e-76ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A396IYJ41e-144A0A396IYJ4_MEDTR; Putative transcription factor AP2-EREBP family
STRINGAES735701e-145(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.19e-56ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]