PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA32245

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

DBB

Protein Properties

Length: 194aa MW: 21433.2 Da PI: 6.9283

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA32245	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.9	3.6e-07	4	44	5	38
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38 C+ +++++++lfC+ ++ lC C H+ H+ Tp57577_TGAC_v2_mRNA32245 4 QCDVCNKHQASLFCTADEAALCSACDHRVHHAnklaskhHR 44 7****99*****************9644477777555 PP
2	zf-B_box	20.7	8.9e-07	56	93	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 + C+ ++e + fC++++ +C+dC l++H Ht Tp57577_TGAC_v2_mRNA32245 56 LPLCDICHERKGFVFCQEDRAIVCKDCDLKTHAAneHT 93 578****99*******************556776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.893	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	1.61E-6	3	47	No hit	No description
Pfam	PF00643	1.6E-5	4	42	IPR000315	B-box-type zinc finger
SMART	SM00336	3.1E-4	4	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.072	54	101	IPR000315	B-box-type zinc finger
SMART	SM00336	6.5E-12	54	101	IPR000315	B-box-type zinc finger
CDD	cd00021	8.84E-8	57	101	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MKIQCDVCNK HQASLFCTAD EAALCSACDH RVHHANKLAS KHHRFSLNDL NSPNHLPLCD 60 ICHERKGFVF CQEDRAIVCK DCDLKTHAAN EHTKKHNRFL LSGIKLLSHA DTSLSPAPPA 120 PPAAINKGSL VITNNEEAGS FTISEYLINT IPGWKFEDFI DSSSSFSSSP FDTILVPQAP 180 QSSFYYSEKM DSR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269\|PubMed:17965270, ECO:0000269\|PubMed:21070414}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA32245

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003603724.1	5e-87	B-box zinc finger protein 21
Swissprot	Q9LQZ7	2e-59	BBX21_ARATH; B-box zinc finger protein 21
TrEMBL	A0A2K3MUX3	1e-123	A0A2K3MUX3_TRIPR; Putative salt tolerance-like protein
STRING	AES73975	2e-86	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1448	34	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	4e-54	salt tolerance homolog2

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA32245

Publications ? help Back to Top
Xu D, et al. BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60 [PMID:27325768] Xu DB, et al. The G-Protein β Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 in Arabidopsis. Mol Plant, 2017. 10(9): p. 1206-1223 [PMID:28827171] Xu D,Jiang Y,Li J,Holm M,Deng XW The B-Box Domain Protein BBX21 Promotes Photomorphogenesis. Plant Physiol., 2018. 176(3): p. 2365-2375 [PMID:29259103] Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains. Plant Physiol., 2018. 176(4): p. 2963-2976 [PMID:29439209] Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum. Plant Physiol., 2018. 177(1): p. 369-380 [PMID:29555784] Kang X, et al. HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture. Plant Cell Environ., 2018. 41(8): p. 1912-1925 [PMID:29748960]