PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA32304

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

WRKY

Protein Properties

Length: 175aa MW: 20058.5 Da PI: 6.2417

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA32304	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	32.5	1.8e-10	124	147	2	25
--SS-EEEEEEE--TT-SS-EEEE CS WRKY 2 dDgynWrKYGqKevkgsefprsYY 25 +Dg++WrKYGqK++ +++fpr Y Tp57577_TGAC_v2_mRNA32304 124 EDGHQWRKYGQKKILNNDFPRYIY 147 7********************877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-9	110	148	IPR003657	WRKY domain
PROSITE profile	PS50811	9.649	118	156	IPR003657	WRKY domain
SuperFamily	SSF118290	3.27E-8	121	147	IPR003657	WRKY domain
SMART	SM00774	7.2E-5	123	155	IPR003657	WRKY domain
Pfam	PF03106	1.5E-9	124	155	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MENIENLAHG RGKVIDELLR GRELANQLRH LLNESGDIDH NNNDSTTPFA ENLLKEVLMT 60 FTNSLLFLNN NNLTSDVSDA QLTKSEDSLE SNCKSTSIVK ERRGCYKRRK VSQTWEKESE 120 QPEEDGHQWR KYGQKKILNN DFPRYIYLII HTCSAGLLLL LDSMVVFGFS HSTW*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA32304

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003623638.1	4e-76	probable WRKY transcription factor 70
TrEMBL	A0A2K3NF97	9e-91	A0A2K3NF97_TRIPR; WRKY transcription factor
STRING	AES79856	1e-75	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1995	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56400.1	3e-14	WRKY DNA-binding protein 70

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA32304