PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA32315
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 185aa    MW: 20929.5 Da    PI: 6.4286
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA32315genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000151941123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               y+C+ C++ F++   L  H++ H
  Tp57577_TGAC_v2_mRNA32315 19 YECTFCKRGFTNAQALGGHMNIH 41
                               99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.02E-61745No hitNo description
Gene3DG3DSA:3.30.160.603.9E-41845IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4891946IPR007087Zinc finger, C2H2
SMARTSM003550.00971941IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802141IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MNSSEEGGGD DNQGKKCSYE CTFCKRGFTN AQALGGHMNI HRKDRSKASK QSNYSSSSQV  60
SNKFFTNDEG VAFPYANSEQ HMSQNFDHGM YFQHQYFPTP PPNNYLVGNN YQPSNVHGFG  120
YEYSRSSSNW SNLHLNQELQ GPNLSLQIGS SQHYVDNTHH QRIKRGNDEE ENEVDLELRL  180
GHDP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA32315
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1452021e-44AC145202.24 Medicago truncatula clone mth2-15e9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003590803.14e-75probable transcriptional regulator RABBIT EARS
TrEMBLA0A2K3LE101e-135A0A2K3LE10_TRIPR; Transcriptional regulator TAC1-like protein
STRINGAES610542e-74(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.11e-14C2H2 family protein