PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA32351
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family TALE
Protein Properties Length: 396aa    MW: 44403.4 Da    PI: 6.9218
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA32351genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.46.8e-101081451954
                                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Tp57577_TGAC_v2_mRNA32351 108 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 145
                                664459******************************88 PP
2BELL66.84.1e-221433072
                       BELL 30 lqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                               +++v+ssFe++aglgsa+ Yt+lAl++iS++FrcLkdai++qi
  Tp57577_TGAC_v2_mRNA32351  1 MEVVVSSFEQAAGLGSARTYTALALQTISKQFRCLKDAITGQI 43
                               89****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075261.1E-15140IPR006563POX domain
PROSITE profilePS5007112.19586149IPR001356Homeobox domain
SMARTSM003895.3E-989153IPR001356Homeobox domain
CDDcd000867.54E-1289150No hitNo description
SuperFamilySSF466893.64E-1790156IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-2992155IPR009057Homeodomain-like
PfamPF059201.4E-18106145IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MEVVVSSFEQ AAGLGSARTY TALALQTISK QFRCLKDAIT GQIKATNKSL GEEDCFGGKI  60
EGSRLKYVDH QLRQQRALQQ LGMIQHNAWR PQRGLPERSV SVLRAWLFEH FLHPYPKDSD  120
KHMLAKQTGL TRSQVSNWFI NARVRLWKPM VEEMYLEEMK ENELNGSEDK SSKSNEDSSM  180
KVTSPQEKGL ETEPKGFNST QDISQSQDTS IISVSRPQTS PHVGNVRNQS GGFSFIGSSE  240
LEGIPQTSPK KPRNHELIHN PNSFIDVKHN EANNEIKFGD ERQNRDGYSF MGNQTNFMGG  300
FGQYPIGDIG RFDSEQFTPR FSSNGVSLTL GLDSIQGNHQ HQTFLPNQNI QLGRSIDISE  360
PNEFGSINTS SPQYESINMQ NPKRFAAQLL PDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-1695153563Homeobox protein Meis2
3k2a_B3e-1695153563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA32351
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013450217.10.0BEL1-like homeodomain protein 1
RefseqXP_024626266.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-111BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A2K3PHU00.0A0A2K3PHU0_TRIPR; BEL1-like homeodomain protein 1-like (Fragment)
STRINGXP_007162972.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.36e-79BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]