PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA32446
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 323aa    MW: 37400.8 Da    PI: 7.0711
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA32446genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.94.1e-49251593128
                        NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratk 79 
                                pGfrFhPtdeelv++yL++k+++k++ + + ik++diyk++PwdLp+       +v + eke yfF+kr +ky+++ r+nr+t 
  Tp57577_TGAC_v2_mRNA32446  25 PGFRFHPTDEELVTFYLRRKLDKKPIAI-DLIKQIDIYKYDPWDLPSmsslsksSVPGAEKEAYFFCKRGRKYKNSIRPNRVTG 107
                                9**************************9.99***************5467665544458889********************** PP

                        NAM  80 sgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                sg+Wkatg dk+++s+   ++  vglkktLv+y+g+a kg+ktdW+mhe+r+
  Tp57577_TGAC_v2_mRNA32446 108 SGFWKATGIDKPIYSNggeGKDCVGLKKTLVYYRGSAGKGTKTDWMMHEFRF 159
                                ***************96655556***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-5223195IPR003441NAC domain
PROSITE profilePS5100551.01423195IPR003441NAC domain
PfamPF023651.5E-2425158IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGFNEDFNMD HNEYVVDDDE DVPLPGFRFH PTDEELVTFY LRRKLDKKPI AIDLIKQIDI  60
YKYDPWDLPS MSSLSKSSVP GAEKEAYFFC KRGRKYKNSI RPNRVTGSGF WKATGIDKPI  120
YSNGGEGKDC VGLKKTLVYY RGSAGKGTKT DWMMHEFRFP SKIIDANTNL PYAKNFDVDN  180
AHEAEIWTLC RIFKRNVSQR KPQMAEVKSF ATKRQPIQEK RSRMDSNMEF NINQQTYINF  240
GESHEQHHHN EDKPINNYAI SDQRNQFHVD QLSSSVPHQP QQNNVTQYSN FWINQAANEL  300
LSFDNWDELG SVVKFAVDSP SL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-442520119171NO APICAL MERISTEM PROTEIN
1ut4_B6e-442520119171NO APICAL MERISTEM PROTEIN
1ut7_A6e-442520119171NO APICAL MERISTEM PROTEIN
1ut7_B6e-442520119171NO APICAL MERISTEM PROTEIN
3swm_A6e-442520122174NAC domain-containing protein 19
3swm_B6e-442520122174NAC domain-containing protein 19
3swm_C6e-442520122174NAC domain-containing protein 19
3swm_D6e-442520122174NAC domain-containing protein 19
3swp_A6e-442520122174NAC domain-containing protein 19
3swp_B6e-442520122174NAC domain-containing protein 19
3swp_C6e-442520122174NAC domain-containing protein 19
3swp_D6e-442520122174NAC domain-containing protein 19
4dul_A6e-442520119171NAC domain-containing protein 19
4dul_B6e-442520119171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA32446
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003596151.20.0transcription factor JUNGBRUNNEN 1
SwissprotQ9SK553e-82NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A2K3N8K80.0A0A2K3N8K8_TRIPR; NAC domain-containing protein
STRINGAES664020.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.12e-82NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]