PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA32495
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 160aa    MW: 18369.4 Da    PI: 10.0555
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA32495genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.25.2e-141048240
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
                     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                               +i ++s r+ t+ kR++gi+KK +EL +LC++ ++ ii 
  Tp57577_TGAC_v2_mRNA32495 10 FICDDSARKATYKKRKKGIMKKVSELTILCGIPACAIIS 48
                               578999*****************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.11147IPR002100Transcription factor, MADS-box
SMARTSM004326.0E-18160IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.5E-21178IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-6323IPR002100Transcription factor, MADS-box
PfamPF003196.6E-151050IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MTRKKVKLGF ICDDSARKAT YKKRKKGIMK KVSELTILCG IPACAIISNP FDSKTEVWPD  60
IAEAKQIIER YQNSSVIDGA KIVNQESFLL QRITKAREQL RKQKHDNHEK ELTVRMIGYM  120
KNKQLPDDLS VSDLKQFDKL IDKNLKDLDN KIVELNSFD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLGFICDDSARKATYKKRK
22125KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA32495
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003614286.12e-80agamous-like MADS-box protein AGL80
TrEMBLA0A2K3LDM71e-110A0A2K3LDM7_TRIPR; Agamous-like mads-box protein agl80-like
STRINGAES972449e-80(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13237929
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.25e-32M-type_MADS family protein