PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA32535
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 150aa    MW: 17011.3 Da    PI: 8.6538
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA32535genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-173283256
                        AP2  2 gykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkklege 56
                               +y+GVr+++ +g++ AeIrdp++      r +lg+f++aeeAa+a++ a+ +l+g+
  Tp57577_TGAC_v2_mRNA32535 32 RYRGVRRRP-WGKFGAEIRDPTKpT---GRQWLGTFDSAEEAARAYDCAAIRLRGA 83
                               6********.**********97744...688**********************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.7623290IPR001471AP2/ERF domain
SMARTSM003803.1E-303296IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-223292IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-293292IPR001471AP2/ERF domain
CDDcd000182.82E-293291No hitNo description
PfamPF008473.6E-113282IPR001471AP2/ERF domain
PRINTSPR003673.2E-103344IPR001471AP2/ERF domain
PRINTSPR003673.2E-105672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MLLKKVQLKK LTKILSLREM EEANKKGDEE VRYRGVRRRP WGKFGAEIRD PTKPTGRQWL  60
GTFDSAEEAA RAYDCAAIRL RGALAILNFP DEYYFHLSSL LSSSSSSTCA IASTSSTQHK  120
EVIEFEYLDN KVLEDLLASS KEENEKKNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-31271479129Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA32535
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013463356.13e-70ethylene-responsive transcription factor ERF098
SwissprotQ9LTC58e-39ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2Z6NUV43e-80A0A2Z6NUV4_TRISU; Uncharacterized protein
STRINGXP_004487930.18e-61(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-21ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]