PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA32568
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 167aa    MW: 19503.2 Da    PI: 7.2554
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA32568genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.71.7e-242268349
                               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                + ++n+qvtfskRr+g++KKA+EL+vLCd+ +a+i+fs+ +kly +
  Tp57577_TGAC_v2_mRNA32568 22 LDKETNKQVTFSKRRQGLFKKASELCVLCDVHAAIIVFSPADKLYSF 68
                               57899****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-331271IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.3241272IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-281384IPR002100Transcription factor, MADS-box
CDDcd002651.04E-321384No hitNo description
PRINTSPR004046.3E-221434IPR002100Transcription factor, MADS-box
PfamPF003192.5E-242368IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-223449IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-224970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MDNMLQQKKK TTGRRKIEIK KLDKETNKQV TFSKRRQGLF KKASELCVLC DVHAAIIVFS  60
PADKLYSFGQ PNTDAILNSY INGTTEFTDA KSMEDSSTYA EYNGQYEESL KMLEMEKKKL  120
AEVENLAKTW NRGDWWNDSI DDMSINQLEQ FMISLYELRK KLFERAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A3e-161380168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B3e-161380168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C3e-161380168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D3e-161380168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3mu6_A2e-161380168Myocyte-specific enhancer factor 2A
3mu6_B2e-161380168Myocyte-specific enhancer factor 2A
3mu6_C2e-161380168Myocyte-specific enhancer factor 2A
3mu6_D2e-161380168Myocyte-specific enhancer factor 2A
6byy_A3e-161390275MEF2 CHIMERA
6byy_B3e-161390275MEF2 CHIMERA
6byy_C3e-161390275MEF2 CHIMERA
6byy_D3e-161390275MEF2 CHIMERA
6bz1_A3e-161390275MEF2 CHIMERA
6bz1_B3e-161390275MEF2 CHIMERA
6bz1_C3e-161390275MEF2 CHIMERA
6bz1_D3e-161390275MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA32568
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465623.14e-88agamous-like MADS-box protein AGL62
TrEMBLA0A2K3LNC61e-120A0A2K3LNC6_TRIPR; Agamous-like mads-box protein agl62-like
STRINGAES844162e-86(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-34AGAMOUS-like 62