PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3257
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 71aa    MW: 8272.7 Da    PI: 9.646
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3257genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.82.1e-121447133
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.T CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.k 33
                              rg W++eEde+l+++++ +G g+W+++++  g k
  Tp57577_TGAC_v2_mRNA3257 14 RGLWSPEEDEKLIKYITTYGHGCWSSVPKLAGtK 47
                              789*****************************32 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-15643IPR009057Homeodomain-like
PROSITE profilePS5129411.854958IPR017930Myb domain
SuperFamilySSF466898.28E-11960IPR009057Homeodomain-like
SMARTSM007178.1E-61362IPR001005SANT/Myb domain
PfamPF002495.4E-101447IPR001005SANT/Myb domain
CDDcd001674.48E-71747No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
MVHHSCCNKQ KVKRGLWSPE EDEKLIKYIT TYGHGCWSSV PKLAGTKKKL YTIYYFIKYI  60
VFKDVERVAD *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lignified secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence (PubMed:12753590, PubMed:17147638, PubMed:17329564). May play a role in specifying early endothecial cell development by regulating a number of genes linked to secondary thickening such as NST1 and NST2. Acts upstream of the lignin biosynthesis pathway (PubMed:17329564). {ECO:0000269|PubMed:12753590, ECO:0000269|PubMed:17147638, ECO:0000269|PubMed:17329564}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA3257
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin. {ECO:0000269|PubMed:23410518}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0045213e-36AP004521.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT17K09, TM0049a, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016171132.13e-27transcription factor MYB26-like isoform X1
SwissprotQ9SPG32e-25MYB26_ARATH; Transcription factor MYB26
TrEMBLA0A0S3SFU76e-26A0A0S3SFU7_PHAAN; Uncharacterized protein
TrEMBLA0A1J6L3R81e-25A0A1J6L3R8_NICAT; Transcription factor myb26
TrEMBLA0A1S4AQP01e-25A0A1S4AQP0_TOBAC; transcription factor MYB26-like isoform X1
TrEMBLA0A1S4CIN31e-25A0A1S4CIN3_TOBAC; transcription factor MYB26-like isoform X2
TrEMBLA0A1S4CJG51e-25A0A1S4CJG5_TOBAC; transcription factor MYB26-like isoform X1
TrEMBLA0A1U7Y1Q81e-25A0A1U7Y1Q8_NICSY; myb-related protein 308 isoform X1
STRINGXP_009795891.12e-26(Nicotiana sylvestris)
STRINGXP_009616294.12e-26(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1750046
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.17e-28myb domain protein 26
Publications ? help Back to Top
  1. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  2. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  3. Ghelli R, et al.
    A Newly Identified Flower-Specific Splice Variant of AUXIN RESPONSE FACTOR8 Regulates Stamen Elongation and Endothecium Lignification in Arabidopsis.
    Plant Cell, 2018. 30(3): p. 620-637
    [PMID:29514943]